RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ARHGEF6Q15052 776 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 ABHD15Q6UXT9 468 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 DHX37Q8IY37 1157 aaKnown RBP16.39■□□□□ 0.21
VRK3-212ENST00000596814 TRMT44Q8IYL2 757 aaKnown RBP16.39■□□□□ 0.21
VRK3-212ENST00000596814 TRIB2Q92519 343 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 STAMQ92783 540 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 ERCC4Q92889 916 aaPredicted RBP16.39■□□□□ 0.21
VRK3-212ENST00000596814 COPS5Q92905 334 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 MTRQ99707 1265 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 ZSWIM4Q9H7M6 989 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 KIAA1468Q9P260 1216 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 DNM3Q9UQ16 869 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 TELO2Q9Y4R8 837 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 MYH9P35579 1960 aaKnown RBP16.39■□□□□ 0.21
VRK3-212ENST00000596814 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.38■□□□□ 0.21
VRK3-212ENST00000596814 E9PMD0 336 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 NOP56O00567 594 aaKnown RBP16.38■□□□□ 0.21
VRK3-212ENST00000596814 GTPBP6O43824 516 aaPredicted RBP16.38■□□□□ 0.21
VRK3-212ENST00000596814 ATG7O95352 703 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 GH1P01241 217 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 ZNF445P59923 1031 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 PSMC5P62195 406 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 MCM6Q14566 821 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 CCDC144BQ3MJ40 725 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 PRAMEF19Q5SWL8 479 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 TMEM63BQ5T3F8 832 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 MFSD14CQ5VZR4 134 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 IQSEC1Q6DN90 963 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 SV2BQ7L1I2 683 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 WRAP73Q9P2S5 460 aaPredicted RBP16.38■□□□□ 0.21
VRK3-212ENST00000596814 TSKSQ9UJT2 592 aa16.38■□□□□ 0.21
VRK3-212ENST00000596814 PCNTO95613 3336 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 NKRFO15226 690 aaKnown RBP eCLIP16.37■□□□□ 0.21
VRK3-212ENST00000596814 DKC1O60832 514 aaKnown RBP eCLIP16.37■□□□□ 0.216e-11■■■■■ 26.8
VRK3-212ENST00000596814 MYL1P05976 194 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 PLA2G4BP0C869 781 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 ZNF865P0CJ78 1059 aaPredicted RBP16.37■□□□□ 0.21
VRK3-212ENST00000596814 PSMC6P62333 389 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 AMPD3Q01432 767 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 ARHGAP1Q07960 439 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 DHX8Q14562 1220 aaKnown RBP16.37■□□□□ 0.21
VRK3-212ENST00000596814 UGCGQ16739 394 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 DUSP28Q4G0W2 176 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 GJC2Q5T442 439 aaPredicted RBP16.37■□□□□ 0.21
VRK3-212ENST00000596814 CCDC60Q8IWA6 550 aaPredicted RBP16.37■□□□□ 0.21
VRK3-212ENST00000596814 ATP6V0A1Q93050 837 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 SPATA33Q96N06 139 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 NACC1Q96RE7 527 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 GABBR1Q9UBS5 961 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 NRBP1Q9UHY1 535 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 IGSF9BQ9UPX0 1349 aa16.37■□□□□ 0.21
VRK3-212ENST00000596814 GSTTP1A0A1W2PQM5 241 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 BACH1O14867 736 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 LYPLA2O95372 231 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 EYA4O95677 639 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 SSBP05455 408 aaKnown RBP eCLIP16.36■□□□□ 0.21
VRK3-212ENST00000596814 SMPD1P17405 629 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 TNFAIP2Q03169 654 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 LAMC2Q13753 1193 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 HSDL1Q3SXM5 330 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 C4orf19Q8IY42 314 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 PIGOQ8TEQ8 1089 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 SEPT1Q8WYJ6 367 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 SMARCE1Q969G3 411 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 EMID1Q96A84 441 aaPredicted RBP16.36■□□□□ 0.21
VRK3-212ENST00000596814 GPR20Q99678 358 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 LRRC27Q9C0I9 530 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 BLZF1Q9H2G9 400 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 WBP1LQ9NX94 342 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 A0A087WWV3 80 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 SMC2O95347 1197 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 PTGS1P23219 599 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 CASP1P29466 404 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 TCF7P36402 384 aaPredicted RBP16.36■□□□□ 0.21
VRK3-212ENST00000596814 DPYDQ12882 1025 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 CUL4BQ13620 913 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 SWSAP1Q6NVH7 229 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 SASS6Q6UVJ0 657 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 LRSAM1Q6UWE0 723 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 ZNF302Q9NR11 478 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 TUBE1Q9UJT0 475 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 PCDHA5Q9Y5H7 936 aa16.36■□□□□ 0.21
VRK3-212ENST00000596814 IGKV6D-21A0A0A0MT36 114 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 CCDC192P0DO97 292 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 SLC12A3P55017 1021 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 FAM160B1Q5W0V3 765 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 SYT2Q8N9I0 419 aaPredicted RBP16.35■□□□□ 0.21
VRK3-212ENST00000596814 OR6J1Q8NGC5 347 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 RAET1EQ8TD07 263 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 C7orf25Q9BPX7 421 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 TRIM9Q9C026 710 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 BHMT2Q9H2M3 363 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 ARID2Q68CP9 1835 aa16.35■□□□□ 0.21
VRK3-212ENST00000596814 ADCY6O43306 1168 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 CYBAP13498 195 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 YWHABP31946 246 aaKnown RBP16.34■□□□□ 0.21
VRK3-212ENST00000596814 PRMT2P55345 433 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 TYRO3Q06418 890 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 NT5DC1Q5TFE4 455 aa16.34■□□□□ 0.21
VRK3-212ENST00000596814 GPBP1Q86WP2 473 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms