RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ZNF365Q70YC5 407 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 PLPPR4Q7Z2D5 763 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 NEK8Q86SG6 692 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 TMEM199Q8N511 208 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 FBXO18Q8NFZ0 1043 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 HAS1Q92839 578 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 ATP6V0A1Q93050 837 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 LRCH3Q96II8 777 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 RIT2Q99578 217 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 UNC45AQ9H3U1 944 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 KCNMB3Q9NPA1 279 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 IL23AQ9NPF7 189 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 ERAP1Q9NZ08 941 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 DDX25Q9UHL0 483 aaKnown RBP12.63□□□□□ -0.39
VRK3-210ENST00000596121 ZNF215Q9UL58 517 aaPredicted RBP12.63□□□□□ -0.39
VRK3-210ENST00000596121 NOD1Q9Y239 953 aa12.63□□□□□ -0.39
VRK3-210ENST00000596121 PITPNM1O00562 1244 aa12.62□□□□□ -0.39
VRK3-210ENST00000596121 CCNT1O60563 726 aaKnown RBP12.62□□□□□ -0.39
VRK3-210ENST00000596121 CKBP12277 381 aa12.62□□□□□ -0.39
VRK3-210ENST00000596121 INSRRP14616 1297 aa12.62□□□□□ -0.39
VRK3-210ENST00000596121 HMGN5P82970 282 aaKnown RBP12.62□□□□□ -0.39
VRK3-210ENST00000596121 GRIK4Q16099 956 aa12.62□□□□□ -0.39
VRK3-210ENST00000596121 ZNF618Q5T7W0 954 aa12.62□□□□□ -0.39
VRK3-210ENST00000596121 ZNF746Q6NUN9 644 aaPredicted RBP12.62□□□□□ -0.39
VRK3-210ENST00000596121 POTEDQ86YR6 584 aa12.62□□□□□ -0.39
VRK3-210ENST00000596121 AFAP1L1Q8TED9 768 aa12.62□□□□□ -0.39
VRK3-210ENST00000596121 TRAPPC12Q8WVT3 735 aa12.62□□□□□ -0.39
VRK3-210ENST00000596121 SCN5AQ14524 2016 aa12.62□□□□□ -0.39
VRK3-210ENST00000596121 TET1Q8NFU7 2136 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 ZBTB42B2RXF5 422 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 EML1O00423 815 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 CHMP2AO43633 222 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 GAS7O60861 476 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 SELPP16109 830 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 MCM2P49736 904 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 KRT76Q01546 638 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 PPFIA1Q13136 1202 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 PPIGQ13427 754 aaKnown RBP eCLIP12.61□□□□□ -0.393e-6■■■■□ 22
VRK3-210ENST00000596121 BFSP2Q13515 415 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 CUL4AQ13619 759 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 TRIM29Q14134 588 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 UGCGQ16739 394 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 LRIT3Q3SXY7 679 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 RASIP1Q5U651 963 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 LRCH2Q5VUJ6 765 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 FAM109BQ6ICB4 259 aaPredicted RBP12.61□□□□□ -0.39
VRK3-210ENST00000596121 MIS18BP1Q6P0N0 1132 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 FAM184AQ8NB25 1140 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 IL27Q8NEV9 243 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 AZI2Q9H6S1 392 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 BRMS1Q9HCU9 246 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 ZNF302Q9NR11 478 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 CXXC1Q9P0U4 656 aaPredicted RBP12.61□□□□□ -0.39
VRK3-210ENST00000596121 VAV3Q9UKW4 847 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 PCDHA10Q9Y5I2 948 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 MAFBQ9Y5Q3 323 aaPredicted RBP12.61□□□□□ -0.39
VRK3-210ENST00000596121 NRCAMQ92823 1304 aa12.61□□□□□ -0.39
VRK3-210ENST00000596121 MBLAC1A4D2B0 266 aaPredicted RBP12.6□□□□□ -0.39
VRK3-210ENST00000596121 BACH1O14867 736 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 ZNF862O60290 1169 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 NBNO60934 754 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 STBD1O95210 358 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 GJB2P29033 226 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 IGBP1P78318 339 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 LRRC8DQ7L1W4 858 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 DEFB128Q7Z7B8 93 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 SMAP1Q8IYB5 467 aaPredicted RBP12.6□□□□□ -0.39
VRK3-210ENST00000596121 RETREG2Q8NC44 543 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 CAGE1Q8TC20 777 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 ATP8B4Q8TF62 1192 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 TEKT3Q9BXF9 490 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 TMEM60Q9H2L4 133 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 FOXP1Q9H334 677 aaPredicted RBP12.6□□□□□ -0.39
VRK3-210ENST00000596121 DISC1Q9NRI5 854 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 GABBR1Q9UBS5 961 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 TRPC6Q9Y210 931 aa12.6□□□□□ -0.39
VRK3-210ENST00000596121 POTEB3A0JP26 581 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 WDR64B1ANS9 1081 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 FGBP02675 491 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 PSAPP07602 524 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 GCFC2P16383 781 aaKnown RBP12.59□□□□□ -0.39
VRK3-210ENST00000596121 ATP2B1P20020 1258 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 THPOP40225 353 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 TOB1P50616 345 aaPredicted RBP12.59□□□□□ -0.39
VRK3-210ENST00000596121 SPIRE1Q08AE8 756 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 FAM160B1Q5W0V3 765 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 PDXDC2PQ6P474 469 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 POTEBQ6S5H4 581 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 OTOP2Q7RTS6 562 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 TRMT1LQ7Z2T5 733 aaKnown RBP12.59□□□□□ -0.39
VRK3-210ENST00000596121 HERVK_113Q902F9 699 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 FAM20AQ96MK3 541 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 IGSF9BQ9UPX0 1349 aa12.59□□□□□ -0.39
VRK3-210ENST00000596121 TMEM150BA6NC51 233 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 GRXCR1A8MXD5 290 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 CHRNA1P02708 482 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 CXCL10P02778 98 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 CTSHP09668 335 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 GNAT1P11488 350 aa12.58□□□□□ -0.4
VRK3-210ENST00000596121 U2AF2P26368 475 aaKnown RBP eCLIP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms