RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 AFAP1L1Q8TED9 768 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 ATP6V0A1Q93050 837 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 ZNF302Q9NR11 478 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 SETD4Q9NVD3 440 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 FAM205CA6NFA0 338 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 SLC37A4O43826 429 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 HOXC8P31273 242 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 JAK3P52333 1124 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 CCL23P55773 120 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 PPIGQ13427 754 aaKnown RBP eCLIP16.97■□□□□ 0.312e-8■■□□□ 12.9
UPF1-202ENST00000594243 SLFN12Q8IYM2 578 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 TDHQ8IZJ6 230 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 KCNMB3Q9NPA1 279 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 DISC1Q9NRI5 854 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 PCDH10Q9P2E7 1040 aa16.97■□□□□ 0.31
UPF1-202ENST00000594243 RRN3P2A6NIE6 340 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 H3BQV1 296 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 CSF2RAP15509 400 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 ZNF200P98182 395 aaPredicted RBP16.96■□□□□ 0.31
UPF1-202ENST00000594243 PPFIA1Q13136 1202 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 HIC1Q14526 733 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 PDXDC2PQ6P474 469 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 NOSTRINQ8IVI9 506 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 CCDC60Q8IWA6 550 aaPredicted RBP16.96■□□□□ 0.31
UPF1-202ENST00000594243 RPUSD2Q8IZ73 545 aaKnown RBP16.96■□□□□ 0.31
UPF1-202ENST00000594243 RDM1Q8NG50 284 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 CTAGE1Q96RT6 745 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 TRPC6Q9Y210 931 aa16.96■□□□□ 0.31
UPF1-202ENST00000594243 MAFBQ9Y5Q3 323 aaPredicted RBP16.96■□□□□ 0.31
UPF1-202ENST00000594243 LTBP2Q14767 1821 aa16.96■□□□□ 0.3
UPF1-202ENST00000594243 UMODL1Q5DID0 1318 aa16.96■□□□□ 0.3
UPF1-202ENST00000594243 POTEB3A0JP26 581 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 K7ELQ4 463 aaPredicted RBP16.95■□□□□ 0.3
UPF1-202ENST00000594243 TREHO43280 583 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 CHMP2AO43633 222 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 PARNO95453 639 aaKnown RBP16.95■□□□□ 0.3
UPF1-202ENST00000594243 IQCF3P0C7M6 154 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 U2AF2P26368 475 aaKnown RBP eCLIP16.95■□□□□ 0.3
UPF1-202ENST00000594243 RFC2P35250 354 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 ADAM17P78536 824 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 RBL2Q08999 1139 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 PLCB4Q15147 1175 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 LARP1BQ659C4 914 aaKnown RBP16.95■□□□□ 0.3
UPF1-202ENST00000594243 POTEBQ6S5H4 581 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 MIER3Q7Z3K6 550 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 SERINC5Q86VE9 423 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 CKAP2LQ8IYA6 745 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 GJA10Q969M2 543 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 SNX21Q969T3 373 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 WNT8AQ9H1J5 351 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 UNC45AQ9H3U1 944 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 GABBR1Q9UBS5 961 aa16.95■□□□□ 0.3
UPF1-202ENST00000594243 NOL7Q9UMY1 257 aaKnown RBP16.95■□□□□ 0.3
UPF1-202ENST00000594243 DNAH12Q6ZR08 3092 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 HBP1O60381 514 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 NEMFO60524 1076 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 CKBP12277 381 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 INSRRP14616 1297 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 TRAPPC10P48553 1259 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 PPP2R5CQ13362 524 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 ORC2Q13416 577 aaPredicted RBP16.94■□□□□ 0.3
UPF1-202ENST00000594243 GRIK4Q16099 956 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 B3GNT9Q6UX72 402 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 POTEDQ86YR6 584 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 ATP8B4Q8TF62 1192 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 LMBR1Q8WVP7 490 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 HAS1Q92839 578 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 INTS4Q96HW7 963 aaKnown RBP16.94■□□□□ 0.3
UPF1-202ENST00000594243 IL23AQ9NPF7 189 aa16.94■□□□□ 0.3
UPF1-202ENST00000594243 PFKMP08237 780 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 SELPP16109 830 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 ATP2B1P20020 1258 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 CALCRLQ16602 461 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 MCTP1Q6DN14 999 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 TAF2Q6P1X5 1199 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 PSRC1Q6PGN9 363 aaPredicted RBP16.93■□□□□ 0.3
UPF1-202ENST00000594243 BBXQ8WY36 941 aaPredicted RBP16.93■□□□□ 0.3
UPF1-202ENST00000594243 DHX38Q92620 1227 aaKnown RBP16.93■□□□□ 0.3
UPF1-202ENST00000594243 SCLYQ96I15 445 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 NRBP2Q9NSY0 501 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 TUBE1Q9UJT0 475 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 PCDHA12Q9UN75 941 aa16.93■□□□□ 0.3
UPF1-202ENST00000594243 CAND2O75155 1236 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 FGBP02675 491 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 RPLP2P05387 115 aaKnown RBP16.92■□□□□ 0.3
UPF1-202ENST00000594243 ATP4AP20648 1035 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 PDCP20941 246 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 MCM7P33993 719 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 THPOP40225 353 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 EPHB4P54760 987 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 IGBP1P78318 339 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 SHHQ15465 462 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 TRIM71Q2Q1W2 868 aaKnown RBP16.92■□□□□ 0.3
UPF1-202ENST00000594243 ZNF484Q5JVG2 852 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 LRRC8DQ7L1W4 858 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 FAM167AQ96KS9 214 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 CEP131Q9UPN4 1083 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 SZT2Q5T011 3432 aa16.92■□□□□ 0.3
UPF1-202ENST00000594243 COL1A2P08123 1366 aa16.91■□□□□ 0.3
UPF1-202ENST00000594243 MBLAC1A4D2B0 266 aaPredicted RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms