RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 TAF2Q6P1X5 1199 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 PLPPR4Q7Z2D5 763 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 RSPH3Q86UC2 560 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 ZNF710Q8N1W2 664 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 WASF1Q92558 559 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 GPKOWQ92917 476 aaPredicted RBP eCLIP11.96□□□□□ -0.49
LIG3-212ENST00000590181 TCEANC2Q96MN5 208 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 AZI2Q9H6S1 392 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 JPH1Q9HDC5 661 aaPredicted RBP11.96□□□□□ -0.49
LIG3-212ENST00000590181 KCNH7Q9NS40 1196 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 PDRG1Q9NUG6 133 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 SLC9A2Q9UBY0 812 aa11.96□□□□□ -0.49
LIG3-212ENST00000590181 RALGAPA2Q2PPJ7 1873 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 LCHNA4D1U4 455 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 LPXNO60711 386 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 GPR37L1O60883 481 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 CXCL10P02778 98 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 CKBP12277 381 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 WDR5P61964 334 aaKnown RBP11.95□□□□□ -0.5
LIG3-212ENST00000590181 ARHGAP4P98171 946 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 SEMA3FQ13275 785 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 COL9A3Q14050 684 aaPredicted RBP11.95□□□□□ -0.5
LIG3-212ENST00000590181 LRRC8DQ7L1W4 858 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 ATP6V0A1Q93050 837 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 ALG1Q9BT22 464 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 ANO3Q9BYT9 981 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 TCEAL9Q9UHQ7 104 aa11.95□□□□□ -0.5
LIG3-212ENST00000590181 LGR5O75473 907 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 ATG7O95352 703 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 ZNF286BP0CG31 522 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 SMIM10L2AP0DMW4 78 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 SMIM10L2BP0DMW5 78 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 CIITAP33076 1130 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 TCF7P36402 384 aaPredicted RBP11.94□□□□□ -0.5
LIG3-212ENST00000590181 CHMP4BP1P59074 171 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 IKBKEQ14164 716 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 PKN1Q16512 942 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 UBE2SQ16763 222 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 CNKSR3Q6P9H4 555 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 TMCO2Q7Z6W1 182 aaPredicted RBP11.94□□□□□ -0.5
LIG3-212ENST00000590181 SMAP1Q8IYB5 467 aaPredicted RBP11.94□□□□□ -0.5
LIG3-212ENST00000590181 CRYGNQ8WXF5 182 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 APBB2Q92870 758 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 NAP1L4Q99733 375 aaKnown RBP11.94□□□□□ -0.5
LIG3-212ENST00000590181 RNPEPQ9H4A4 650 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 MTUS1Q9ULD2 1270 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 SQORQ9Y6N5 450 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 WDFY4Q6ZS81 3184 aa11.94□□□□□ -0.5
LIG3-212ENST00000590181 MYH9P35579 1960 aaKnown RBP11.93□□□□□ -0.5
LIG3-212ENST00000590181 hCG_1642624A0A1W2PR95 340 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 RSPH10B2B2RC85 870 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 RSPH10BP0C881 870 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 DEFB103AP81534 67 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 TOB2Q14106 344 aaPredicted RBP11.93□□□□□ -0.5
LIG3-212ENST00000590181 FAM26DQ5JW98 314 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 FAM160B1Q5W0V3 765 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 MOXD1Q6UVY6 613 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 RAB11FIP4Q86YS3 637 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 NME8Q8N427 588 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 DAGLBQ8NCG7 672 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 GLG1Q92896 1179 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 CTAGE1Q96RT6 745 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 ZBED2Q9BTP6 218 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 SLC26A6Q9BXS9 759 aa11.93□□□□□ -0.5
LIG3-212ENST00000590181 SLKQ9H2G2 1235 aaPredicted RBP11.93□□□□□ -0.5
LIG3-212ENST00000590181 UBE2ZQ9H832 354 aaPredicted RBP11.93□□□□□ -0.5
LIG3-212ENST00000590181 RNF216Q9NWF9 866 aaPredicted RBP11.93□□□□□ -0.5
LIG3-212ENST00000590181 TRIOO75962 3097 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 IPO5O00410 1097 aaKnown RBP11.92□□□□□ -0.5
LIG3-212ENST00000590181 ATP9AO75110 1047 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 CPA1P15085 419 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 STAT5BP51692 787 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 ADAM17P78536 824 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 KRT76Q01546 638 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 TRIM71Q2Q1W2 868 aaKnown RBP11.92□□□□□ -0.5
LIG3-212ENST00000590181 TYW1BQ6NUM6 668 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 ZNF746Q6NUN9 644 aaPredicted RBP11.92□□□□□ -0.5
LIG3-212ENST00000590181 RIT2Q99578 217 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 AGO4Q9HCK5 861 aaKnown RBP11.92□□□□□ -0.5
LIG3-212ENST00000590181 CD320Q9NPF0 282 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 PCDHA4Q9UN74 947 aa11.92□□□□□ -0.5
LIG3-212ENST00000590181 DOCK5Q9H7D0 1870 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 STK36Q9NRP7 1315 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 COL4A6Q14031 1691 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 IGKV6D-21A0A0A0MT36 114 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 GSTTP1A0A1W2PQM5 241 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 MBLAC1A4D2B0 266 aaPredicted RBP11.91□□□□□ -0.5
LIG3-212ENST00000590181 PI4K2BG5E9Z4 385 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 PFKFB2O60825 505 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 THPOP40225 353 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 NLRP5P59047 1200 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 ACTR2P61160 394 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 ODR4Q5SWX8 454 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 ZNF618Q5T7W0 954 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 MIS18BP1Q6P0N0 1132 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 PLA2G4DQ86XP0 818 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 RDM1Q8NG50 284 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 LMCD1Q9NZU5 365 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 COL1A2P08123 1366 aa11.91□□□□□ -0.5
LIG3-212ENST00000590181 C5orf42Q9H799 3197 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms