RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 LRWD1Q9UFC0 647 aa11.74□□□□□ -0.53
VPS4B-204ENST00000589604 DDX20Q9UHI6 824 aaKnown RBP11.74□□□□□ -0.53
VPS4B-204ENST00000589604 GNEQ9Y223 722 aaKnown RBP11.74□□□□□ -0.53
VPS4B-204ENST00000589604 SPATA31C2B4DYI2 1134 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 CCDC192P0DO97 292 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 PLCG1P19174 1290 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 MNX1P50219 401 aaPredicted RBP11.73□□□□□ -0.53
VPS4B-204ENST00000589604 TNFAIP2Q03169 654 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 TMEM266Q2M3C6 531 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 HYIQ5T013 277 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 IQUBQ8NA54 791 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 GRPEL1Q9HAV7 217 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 BLOC1S4Q9NUP1 217 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 DDX41Q9UJV9 622 aaKnown RBP11.73□□□□□ -0.53
VPS4B-204ENST00000589604 FAM184BQ9ULE4 1060 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 PCDHA5Q9Y5H7 936 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 SYNRGQ9UMZ2 1314 aa11.73□□□□□ -0.53
VPS4B-204ENST00000589604 DHX15O43143 795 aaKnown RBP11.72□□□□□ -0.53
VPS4B-204ENST00000589604 PGK1P00558 417 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 GJB1P08034 283 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 XRCC6P12956 609 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS4B-204ENST00000589604 AKR1A1P14550 325 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 UBA1P22314 1058 aaKnown RBP11.72□□□□□ -0.53
VPS4B-204ENST00000589604 CASP1P29466 404 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 ICAM3P32942 547 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 DPYDQ12882 1025 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 POSTNQ15063 836 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 DUSP28Q4G0W2 176 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 TMEM119Q4V9L6 283 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 RRAGBQ5VZM2 374 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 IQSEC1Q6DN90 963 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 KANK3Q6NY19 840 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 XRRA1Q6P2D8 792 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 U2AF1L4Q8WU68 220 aaKnown RBP11.72□□□□□ -0.53
VPS4B-204ENST00000589604 SCFD2Q8WU76 684 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 PLIN2Q99541 437 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 PYM1Q9BRP8 204 aaKnown RBP11.72□□□□□ -0.53
VPS4B-204ENST00000589604 CRISPLD2Q9H0B8 497 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 JADE2Q9NQC1 790 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 KBTBD4Q9NVX7 518 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 PKD2L1Q9P0L9 805 aa11.72□□□□□ -0.53
VPS4B-204ENST00000589604 B4DLN1 442 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 EML1O00423 815 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 ADAMTS4O75173 837 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 TXNP10599 105 aaKnown RBP11.71□□□□□ -0.53
VPS4B-204ENST00000589604 KCNA2P16389 499 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 EN2P19622 333 aaPredicted RBP11.71□□□□□ -0.53
VPS4B-204ENST00000589604 BMP6P22004 513 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 TXLNAP40222 546 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 AFMP43652 599 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 ARHGAP1Q07960 439 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 ITGB3BPQ13352 177 aaPredicted RBP11.71□□□□□ -0.53
VPS4B-204ENST00000589604 SASS6Q6UVJ0 657 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 KCNK18Q7Z418 384 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 STAMQ92783 540 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 MPHOSPH6Q99547 160 aaKnown RBP11.71□□□□□ -0.53
VPS4B-204ENST00000589604 KCNH7Q9NS40 1196 aa11.71□□□□□ -0.53
VPS4B-204ENST00000589604 MARCH6O60337 910 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 DUSP11O75319 330 aaKnown RBP11.71□□□□□ -0.54
VPS4B-204ENST00000589604 MED24O75448 989 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 STAM2O75886 525 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 SGPL1O95470 568 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 SPATA31C1P0DKV0 1188 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 STAT6P42226 847 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 GJA8P48165 433 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 SOX10P56693 466 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 BEX3Q00994 111 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 SETQ01105 290 aaPredicted RBP11.71□□□□□ -0.54
VPS4B-204ENST00000589604 PPP2R5CQ13362 524 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 MTMR1Q13613 665 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 TTLL4Q14679 1199 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 ANO6Q4KMQ2 910 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 C11orf57Q6ZUT1 292 aaPredicted RBP11.71□□□□□ -0.54
VPS4B-204ENST00000589604 CEP57L1Q8IYX8 460 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 SNX29Q8TEQ0 813 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 GPRASP2Q96D09 838 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 RAB34Q9BZG1 259 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 UPF3AQ9H1J1 476 aaKnown RBP11.71□□□□□ -0.54
VPS4B-204ENST00000589604 DNAJC25Q9H1X3 360 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 AGO4Q9HCK5 861 aaKnown RBP11.71□□□□□ -0.54
VPS4B-204ENST00000589604 CCDC39Q9UFE4 941 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 OGDHLQ9ULD0 1010 aa11.71□□□□□ -0.54
VPS4B-204ENST00000589604 IPO5O00410 1097 aaKnown RBP11.7□□□□□ -0.54
VPS4B-204ENST00000589604 BIN1O00499 593 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 DYNC1LI2O43237 492 aaPredicted RBP11.7□□□□□ -0.54
VPS4B-204ENST00000589604 SLC26A4O43511 780 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 MRE11P49959 708 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 NLRP12P59046 1061 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 STX1AQ16623 288 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 KRT79Q5XKE5 535 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 CCSAPQ6IQ19 270 aaPredicted RBP11.7□□□□□ -0.54
VPS4B-204ENST00000589604 TLK2Q86UE8 772 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 RNF214Q8ND24 703 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 DIS3LQ8TF46 1054 aaKnown RBP11.7□□□□□ -0.54
VPS4B-204ENST00000589604 RIT2Q99578 217 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 CUEDC2Q9H467 287 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 XPNPEP3Q9NQH7 507 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 MAN1B1Q9UKM7 699 aa11.7□□□□□ -0.54
VPS4B-204ENST00000589604 CCDC85CA6NKD9 419 aa11.69□□□□□ -0.54
VPS4B-204ENST00000589604 GGPS1O95749 300 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms