RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	TUFT1	Q9NNX1	390 aa		17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	WRAP73	Q9P2S5	460 aa	Predicted RBP	17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	ASTN1	O14525	1302 aa		17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	SSB	P05455	408 aa	Known RBP eCLIP	17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	NR3C2	P08235	984 aa		17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	PNMA6A	P0CW24	399 aa	Predicted RBP	17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	UBASH3A	P57075	661 aa		17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	CTTN	Q14247	550 aa	Known RBP	17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	GPBP1	Q86WP2	473 aa		17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	KCTD17	Q8N5Z5	321 aa		17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	SYT2	Q8N9I0	419 aa	Predicted RBP	17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	SPATC1L	Q9H0A9	340 aa		17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	IMPACT	Q9P2X3	320 aa		17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	DNM3	Q9UQ16	869 aa		17.09	■□□□□ 0.33
DDX39A-209	ENST00000589318	WDR81	Q562E7	1941 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	LOXHD1	Q8IVV2	1947 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	TRIM49B	A6NDI0	452 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	NRDC	O43847	1150 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	RGS20	O76081	388 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	SERPINC1	P01008	464 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	CHRM1	P11229	460 aa	Predicted RBP	17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	CCND2	P30279	289 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	PABPC4	Q13310	644 aa	Known RBP eCLIP	17.08	■□□□□ 0.33	1e-6	■□□□□ 8.6
DDX39A-209	ENST00000589318	EPHA7	Q15375	998 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	TMCO3	Q6UWJ1	677 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	FASTKD5	Q7L8L6	764 aa	Known RBP	17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	GOLGA6L1	Q8N7Z2	621 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	NSUN6	Q8TEA1	469 aa	Known RBP	17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	SLC10A4	Q96EP9	437 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	INPP4A	Q96PE3	977 aa	Predicted RBP	17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	PSD3	Q9NYI0	1048 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	PKD2L1	Q9P0L9	805 aa		17.08	■□□□□ 0.33
DDX39A-209	ENST00000589318	NPHP3-ACAD11	A0A0J9YXS1	232 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	FRMD3	A2A2Y4	597 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	ATP9A	O75110	1047 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	IDE	P14735	1019 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	MUT	P22033	750 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	COASY	Q13057	564 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	TTI2	Q6NXR4	508 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	DHTKD1	Q96HY7	919 aa	Predicted RBP	17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	R3HDML	Q9H3Y0	253 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	TXNRD2	Q9NNW7	524 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	SLC39A2	Q9NP94	309 aa		17.08	■□□□□ 0.32
DDX39A-209	ENST00000589318	DOCK5	Q9H7D0	1870 aa		17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	DDX39A	O00148	427 aa	Known RBP	17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	PSMA7	O14818	248 aa		17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	ZRANB2	O95218	330 aa	Known RBP eCLIP	17.07	■□□□□ 0.32	3e-7	■■■■□ 25.7
DDX39A-209	ENST00000589318	EYA4	O95677	639 aa		17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	SNAPC2	Q13487	334 aa		17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	STIM1	Q13586	685 aa		17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	GLIS3	Q8NEA6	775 aa		17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	MOV10L1	Q9BXT6	1211 aa	Known RBP	17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	RBPJL	Q9UBG7	517 aa		17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	PCDHA2	Q9Y5H9	948 aa		17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	LRRC37A2	A6NM11	1700 aa		17.07	■□□□□ 0.32
DDX39A-209	ENST00000589318	TESPA1	A2RU30	521 aa	Predicted RBP	17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	CLCN6	P51797	869 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	PSMD2	Q13200	908 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	IRF2BP1	Q8IU81	584 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	TPH2	Q8IWU9	490 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	GPRASP2	Q96D09	838 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	DUSP9	Q99956	384 aa	Known RBP	17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	PAGR1	Q9BTK6	254 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	BHMT2	Q9H2M3	363 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	BMP2K	Q9NSY1	1161 aa	Predicted RBP	17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	TBC1D22B	Q9NU19	505 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	PANK4	Q9NVE7	773 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	FBXO40	Q9UH90	709 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	ZBTB39	O15060	712 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	CBFA2T2	O43439	604 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	CCNE1	P24864	410 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	PPP1R2	P41236	205 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	PLA2G4A	P47712	749 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	FKBP1B	P68106	108 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	CNTN2	Q02246	1040 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	CACNB1	Q02641	598 aa	Predicted RBP	17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	GIT2	Q14161	759 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	PIGO	Q8TEQ8	1089 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	P2RX5	Q93086	422 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	MS4A4A	Q96JQ5	239 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	UBXN6	Q9BZV1	441 aa		17.06	■□□□□ 0.32
DDX39A-209	ENST00000589318	PFAS	O15067	1338 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318		A0A1B0GTH6	734 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	CCZ1B	P86790	482 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	CCZ1	P86791	482 aa	Predicted RBP	17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318		Q3C1V9	767 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	CENPP	Q6IPU0	288 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	MIER3	Q7Z3K6	550 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	ANKRD35	Q8N283	1001 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	GUF1	Q8N442	669 aa	Known RBP	17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	DNER	Q8NFT8	737 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	NEK9	Q8TD19	979 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	REEP2	Q9BRK0	252 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	LXN	Q9BS40	222 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	RUSC1	Q9BVN2	902 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	FGFBP2	Q9BYJ0	223 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	SEMA6B	Q9H3T3	888 aa		17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	GBA2	Q9HCG7	927 aa	Predicted RBP	17.05	■□□□□ 0.32
DDX39A-209	ENST00000589318	LRRC10B	A6NIK2	292 aa		17.04	■□□□□ 0.32

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms