RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 PPP6R2O75170 966 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 NCLP19338 710 aaKnown RBP17.44■□□□□ 0.38
SS18-216ENST00000580751 PSEN2P49810 448 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 STAT5BP51692 787 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 ATN1P54259 1190 aaPredicted RBP17.44■□□□□ 0.38
SS18-216ENST00000580751 PSMC6P62333 389 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 SPIRE1Q08AE8 756 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 SNX17Q15036 470 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 SLC39A14Q15043 492 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 KIAA0753Q2KHM9 967 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 SKOR2Q2VWA4 1001 aaPredicted RBP17.44■□□□□ 0.38
SS18-216ENST00000580751 FAM173BQ6P4H8 233 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 NFRKBQ6P4R8 1299 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 SLC39A5Q6ZMH5 540 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 PLPPR4Q7Z2D5 763 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 C4orf32Q8N8J7 132 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 LINC00301Q8NCQ3 95 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 AFAP1L1Q8TED9 768 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 LEO1Q8WVC0 666 aaPredicted RBP17.44■□□□□ 0.38
SS18-216ENST00000580751 RAB34Q9BZG1 259 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 ZNF302Q9NR11 478 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 MROH7Q68CQ1 1323 aa17.44■□□□□ 0.38
SS18-216ENST00000580751 ARVCFO00192 962 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 HAS3O00219 553 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 RGS19P49795 217 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 FXR2P51116 673 aaKnown RBP eCLIP17.43■□□□□ 0.38
SS18-216ENST00000580751 CHMP4BP1P59074 171 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 SF3A1Q15459 793 aaKnown RBP17.43■□□□□ 0.38
SS18-216ENST00000580751 NBPF20Q3BBV1 942 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 ARL6IP4Q66PJ3 421 aaKnown RBP17.43■□□□□ 0.38
SS18-216ENST00000580751 NCAPH2Q6IBW4 605 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 SWSAP1Q6NVH7 229 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 CCDC60Q8IWA6 550 aaPredicted RBP17.43■□□□□ 0.38
SS18-216ENST00000580751 C7orf31Q8N865 590 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 SLC43A3Q8NBI5 491 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 PCYT2Q99447 389 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 IGSF9BQ9UPX0 1349 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 MYH15Q9Y2K3 1946 aa17.43■□□□□ 0.38
SS18-216ENST00000580751 UBE2HP62256 183 aa17.42■□□□□ 0.38
SS18-216ENST00000580751 PTPN11Q06124 597 aaPredicted RBP17.42■□□□□ 0.38
SS18-216ENST00000580751 STK38Q15208 465 aa17.42■□□□□ 0.38
SS18-216ENST00000580751 PDXDC2PQ6P474 469 aa17.42■□□□□ 0.38
SS18-216ENST00000580751 DTHD1Q6ZMT9 781 aa17.42■□□□□ 0.38
SS18-216ENST00000580751 SESTD1Q86VW0 696 aa17.42■□□□□ 0.38
SS18-216ENST00000580751 ATP6V0A1Q93050 837 aa17.42■□□□□ 0.38
SS18-216ENST00000580751 TFIP11Q9UBB9 837 aaKnown RBP17.42■□□□□ 0.38
SS18-216ENST00000580751 GABBR1Q9UBS5 961 aa17.42■□□□□ 0.38
SS18-216ENST00000580751 MAFBQ9Y5Q3 323 aaPredicted RBP17.42■□□□□ 0.38
SS18-216ENST00000580751 GRIN2DO15399 1336 aa17.42■□□□□ 0.38
SS18-216ENST00000580751 EML1O00423 815 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 DKC1O60832 514 aaKnown RBP eCLIP17.41■□□□□ 0.38
SS18-216ENST00000580751 TECP42680 631 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 CDK7P50613 346 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 RTP1P59025 263 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 EPHA7Q15375 998 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 LRRC26Q2I0M4 334 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 FOXD4L6Q3SYB3 417 aaPredicted RBP17.41■□□□□ 0.38
SS18-216ENST00000580751 TRIM60Q495X7 471 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 FAM47CQ5HY64 1035 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 FOXD4L3Q6VB84 417 aaPredicted RBP17.41■□□□□ 0.38
SS18-216ENST00000580751 ANKRD33Q7Z3H0 272 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 NEK9Q8TD19 979 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 FAM167AQ96KS9 214 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 LMBRD1Q9NUN5 540 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 CLIC4Q9Y696 253 aa17.41■□□□□ 0.38
SS18-216ENST00000580751 POTEMA6NI47 508 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 SPTLC2O15270 562 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 TLR3O15455 904 aaKnown RBP17.4■□□□□ 0.38
SS18-216ENST00000580751 PQBP1O60828 265 aaKnown RBP17.4■□□□□ 0.38
SS18-216ENST00000580751 PRPF40AO75400 957 aaKnown RBP17.4■□□□□ 0.38
SS18-216ENST00000580751 MBD3O95983 291 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 P4HBP07237 508 aaKnown RBP17.4■□□□□ 0.38
SS18-216ENST00000580751 MARK3P27448 753 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 PSMC5P62195 406 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 PDIA5Q14554 519 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 PTPAQ15257 358 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 ERMNQ8TAM6 284 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 ATP8B4Q8TF62 1192 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 TOX2Q96NM4 488 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 FTOQ9C0B1 505 aaKnown RBP eCLIP17.4■□□□□ 0.38
SS18-216ENST00000580751 TRPC6Q9Y210 931 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 ATP11BQ9Y2G3 1177 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 STK24Q9Y6E0 443 aa17.4■□□□□ 0.38
SS18-216ENST00000580751 MYH9P35579 1960 aaKnown RBP17.39■□□□□ 0.37
SS18-216ENST00000580751 A0A1W2PQ27 194 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 A0A1W2PQ64 194 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 A0A1W2PQD8 194 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 GOLGA6L4A6NEF3 574 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 DCDC2CA8MYV0 355 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 SMIM10L2AP0DMW4 78 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 SMIM10L2BP0DMW5 78 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 GNAT1P11488 350 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 QARSP47897 775 aaKnown RBP17.39■□□□□ 0.37
SS18-216ENST00000580751 PRKCEQ02156 737 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 CEBPZQ03701 1054 aaKnown RBP17.39■□□□□ 0.37
SS18-216ENST00000580751 PLCB4Q15147 1175 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 HAUS3Q68CZ6 603 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 FAM126BQ8IXS8 530 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 CKAP2LQ8IYA6 745 aa17.39■□□□□ 0.37
SS18-216ENST00000580751 IGSF22Q8N9C0 903 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms