RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 JADE2Q9NQC1 790 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 BRPF3Q9ULD4 1205 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 PCDHA6Q9UN73 950 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 PCDHA8Q9Y5H6 950 aa7.72□□□□□ -1.17
VPS53-213ENST00000572334 TECTAO75443 2155 aa7.71□□□□□ -1.17
VPS53-213ENST00000572334 CCDC69A6NI79 296 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 HAX1O00165 279 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 ENPP3O14638 875 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 ARP10275 920 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 GHRP10912 638 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 GNAT1P11488 350 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 IL9P15248 144 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 MARK3P27448 753 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 CDC27P30260 824 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 CLK2P49760 499 aaKnown RBP7.71□□□□□ -1.18
VPS53-213ENST00000572334 PPFIA1Q13136 1202 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 ITGB3BPQ13352 177 aaPredicted RBP7.71□□□□□ -1.18
VPS53-213ENST00000572334 GRIK4Q16099 956 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 FBXO47Q5MNV8 452 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 APOA5Q6Q788 366 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 NFXL1Q6ZNB6 911 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 MICU3Q86XE3 530 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 FAM178BQ8IXR5 827 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 TMEM192Q8IY95 271 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 PIP4P2Q8N4L2 257 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 GIMAP8Q8ND71 665 aaPredicted RBP7.71□□□□□ -1.18
VPS53-213ENST00000572334 IL27Q8NEV9 243 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 NEK9Q8TD19 979 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 DNAJB3Q8WWF6 145 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 CRYGNQ8WXF5 182 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 APBB2Q92870 758 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 CUL5Q93034 780 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 LRFN3Q9BTN0 628 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 KCNH7Q9NS40 1196 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 PKD2L1Q9P0L9 805 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 SEC63Q9UGP8 760 aaKnown RBP7.71□□□□□ -1.18
VPS53-213ENST00000572334 ZNF215Q9UL58 517 aaPredicted RBP7.71□□□□□ -1.18
VPS53-213ENST00000572334 SLC12A7Q9Y666 1083 aa7.71□□□□□ -1.18
VPS53-213ENST00000572334 WDFY4Q6ZS81 3184 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 PIEZO1Q92508 2521 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 IGKV6D-21A0A0A0MT36 114 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 POTEB3A0JP26 581 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 GRXCR2A6NFK2 248 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 C5orf67F2Z3F1 127 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 PI4K2BG5E9Z4 385 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 STXBP3O00186 592 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 GRM6O15303 877 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 MAFGO15525 162 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 EDIL3O43854 480 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 ATG7O95352 703 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 CCNE2O96020 404 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 CALM1P0DP23 149 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 CALM2P0DP24 149 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 CALM3P0DP25 149 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 INSRRP14616 1297 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 KCNA5P22460 613 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 LTBRP36941 435 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 GPM6BQ13491 265 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 MTMR1Q13613 665 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 CAMK1Q14012 370 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 PLCB4Q15147 1175 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 TSGA10IPQ3SY00 556 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 TCEAL5Q5H9L2 206 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 TAF2Q6P1X5 1199 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 POTEBQ6S5H4 581 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 HEATR3Q7Z4Q2 680 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 TRAPPC12Q8WVT3 735 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 CLP1Q92989 425 aaKnown RBP7.7□□□□□ -1.18
VPS53-213ENST00000572334 CDHR1Q96JP9 859 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 SAMD11Q96NU1 681 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 YME1L1Q96TA2 773 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 MXRA8Q9BRK3 442 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 SMARCAD1Q9H4L7 1026 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 RIC8AQ9NPQ8 531 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 ANO2Q9NQ90 1003 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 TMEM260Q9NX78 707 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 ERAP1Q9NZ08 941 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 TUBE1Q9UJT0 475 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 CDY2AQ9Y6F7 541 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 NFASCO94856 1347 aa7.7□□□□□ -1.18
VPS53-213ENST00000572334 MYO10Q9HD67 2058 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 IGLV3-22A0A075B6J6 115 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 SPDYE3A6NKU9 549 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 ZBTB42B2RXF5 422 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 H3BQ06 376 aaPredicted RBP7.69□□□□□ -1.18
VPS53-213ENST00000572334 MEIS1O00470 390 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 DHX15O43143 795 aaKnown RBP7.69□□□□□ -1.18
VPS53-213ENST00000572334 GPR37L1O60883 481 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 DGKIO75912 1065 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 ATP4AP20648 1035 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 DNAJB1P25685 340 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 CD52P31358 61 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 GTF2F1P35269 517 aaKnown RBP eCLIP7.69□□□□□ -1.18
VPS53-213ENST00000572334 DEKP35659 375 aaKnown RBP7.69□□□□□ -1.18
VPS53-213ENST00000572334 BMPR1AP36894 532 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 ACTR2P61160 394 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 IGBP1P78318 339 aa7.69□□□□□ -1.18
VPS53-213ENST00000572334 MRPS6P82932 125 aaKnown RBP7.69□□□□□ -1.18
VPS53-213ENST00000572334 DLX2Q07687 328 aaPredicted RBP7.69□□□□□ -1.18
VPS53-213ENST00000572334 CTC1Q2NKJ3 1217 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms