RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 WDR44Q5JSH3 913 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 SLFN13Q68D06 897 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 NSMFQ6X4W1 530 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 EP400NLQ6ZTU2 488 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 TRIM50Q86XT4 487 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 LRRC47Q8N1G4 583 aaKnown RBP6.93□□□□□ -1.3
VPS53-208ENST00000570650 TPCN2Q8NHX9 752 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 PPP1R13LQ8WUF5 828 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 CHURC1Q8WUH1 139 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 SAMD11Q96NU1 681 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 POP1Q99575 1024 aaKnown RBP6.93□□□□□ -1.3
VPS53-208ENST00000570650 C17orf80Q9BSJ5 609 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 IL1RAPL2Q9NP60 686 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 CYP39A1Q9NYL5 469 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 ADD3Q9UEY8 706 aaKnown RBP6.93□□□□□ -1.3
VPS53-208ENST00000570650 MUTYHQ9UIF7 546 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 ISY1Q9ULR0 285 aaKnown RBP6.93□□□□□ -1.3
VPS53-208ENST00000570650 EXOC6BQ9Y2D4 811 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 DYRK1BQ9Y463 629 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 INSL6Q9Y581 213 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 TECTAO75443 2155 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 MYH4Q9Y623 1939 aa6.93□□□□□ -1.3
VPS53-208ENST00000570650 NCK2O43639 380 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 NBNO60934 754 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 TTLL1O95922 423 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 ALDH5A1P51649 535 aaPredicted RBP6.92□□□□□ -1.3
VPS53-208ENST00000570650 KRT76Q01546 638 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 RBL2Q08999 1139 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 TCF15Q12870 199 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 IKBKEQ14164 716 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 COL19A1Q14993 1142 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 PPP2R5BQ15173 497 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 UBE3CQ15386 1083 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 HSP90AB4PQ58FF6 505 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 TCEAL5Q5H9L2 206 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 FAM117BQ6P1L5 589 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 SESTD1Q86VW0 696 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 SUGP1Q8IWZ8 645 aaKnown RBP6.92□□□□□ -1.3
VPS53-208ENST00000570650 ZNF295-AS1Q8N0V1 137 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 ZNF444Q8N0Y2 327 aaPredicted RBP6.92□□□□□ -1.3
VPS53-208ENST00000570650 STK11IPQ8N1F8 1099 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 CLASRPQ8N2M8 674 aaKnown RBP6.92□□□□□ -1.3
VPS53-208ENST00000570650 RHBDD1Q8TEB9 315 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 STAG1Q8WVM7 1258 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 EDAQ92838 391 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 CEP95Q96GE4 821 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 NSUN3Q9H649 340 aaKnown RBP6.92□□□□□ -1.3
VPS53-208ENST00000570650 ZNF287Q9HBT7 754 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 DNAAF2Q9NVR5 837 aaKnown RBP6.92□□□□□ -1.3
VPS53-208ENST00000570650 PAG1Q9NWQ8 432 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 CLDND1Q9NY35 253 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 MTMR4Q9NYA4 1195 aa6.92□□□□□ -1.3
VPS53-208ENST00000570650 TMEM221A6NGB7 291 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 A6NJY4 79 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 MINDY4BA8MYZ0 360 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 H3BNC9 293 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 M0R296 226 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 MBTPS2O43462 519 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 PLA2G6O60733 806 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 DKK1O94907 266 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 AMHP03971 560 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 IFIT2P09913 472 aaKnown RBP6.91□□□□□ -1.3
VPS53-208ENST00000570650 CKBP12277 381 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 SLC1A4P43007 532 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 ATP1A2P50993 1020 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 CHMP4BP1P59074 171 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 HTRA4P83105 476 aaPredicted RBP6.91□□□□□ -1.3
VPS53-208ENST00000570650 GPM6BQ13491 265 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 BAATQ14032 418 aaPredicted RBP6.91□□□□□ -1.3
VPS53-208ENST00000570650 SMAD2Q15796 467 aaKnown RBP6.91□□□□□ -1.3
VPS53-208ENST00000570650 DBN1Q16643 649 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 TCTN1Q2MV58 587 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 EPC2Q52LR7 807 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 GDF6Q6KF10 455 aaPredicted RBP6.91□□□□□ -1.3
VPS53-208ENST00000570650 CEP85Q6P2H3 762 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 GIMAP6Q6P9H5 292 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 RIPOR1Q6ZS17 1223 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 RPAINQ86UA6 219 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 RHPN1Q8TCX5 695 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 SCFD2Q8WU76 684 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 DHX38Q92620 1227 aaKnown RBP6.91□□□□□ -1.3
VPS53-208ENST00000570650 PBXIP1Q96AQ6 731 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 ZNF837Q96EG3 531 aaPredicted RBP6.91□□□□□ -1.3
VPS53-208ENST00000570650 GMCL1Q96IK5 515 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 CTAGE1Q96RT6 745 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 IRF2BPLQ9H1B7 796 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 BOLA2Q9H3K6 86 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 GPAMQ9HCL2 828 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 FAM86C1Q9NVL1 165 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 CCPG1Q9ULG6 757 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 ZDBF2Q9HCK1 2354 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 LCTP09848 1927 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 WDFY4Q6ZS81 3184 aa6.91□□□□□ -1.3
VPS53-208ENST00000570650 LGR5O75473 907 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 CHGBP05060 677 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 THBS1P07996 1170 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 LORP23490 312 aaPredicted RBP6.9□□□□□ -1.3
VPS53-208ENST00000570650 LTBRP36941 435 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 PLA2G4AP47712 749 aa6.9□□□□□ -1.3
VPS53-208ENST00000570650 EPHA4P54764 986 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms