RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 CRB3Q9BUF7 120 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 PRKRIP1Q9H875 184 aaPredicted RBP3.58□□□□□ -1.84
VPS35-209ENST00000568642 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.58□□□□□ -1.84
VPS35-209ENST00000568642 RASSF1Q9NS23 344 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 ATG3Q9NT62 314 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 TFCP2L1Q9NZI6 479 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 GIMAP2Q9UG22 337 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 PCDHB10Q9UN67 800 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 LRRFIP2Q9Y608 721 aaKnown RBP3.58□□□□□ -1.84
VPS35-209ENST00000568642 KMT2BQ9UMN6 2715 aaPredicted RBP3.58□□□□□ -1.84
VPS35-209ENST00000568642 ARHGAP31Q2M1Z3 1444 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 NRXN1Q9ULB1 1477 aa3.58□□□□□ -1.84
VPS35-209ENST00000568642 F5H423 210 aaPredicted RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 H0YGN5 161 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 M0R082 166 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 TPP1O14773 563 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 ERC2O15083 957 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 NCAM2O15394 837 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 VAMP4O75379 141 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 C8AP07357 584 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 ZBTB48P10074 688 aaPredicted RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 ACPPP15309 386 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 PCSK2P16519 638 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 ITPKAP23677 461 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 CYP2C19P33261 490 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 UBA7P41226 1012 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 GRIA4P48058 902 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 CDK8P49336 464 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 MRE11P49959 708 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 CLTCL1P53675 1640 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 PKN2Q16513 984 aaKnown RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 FAM133BQ5BKY9 247 aaKnown RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 ZC3H12AQ5D1E8 599 aaKnown RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 IER5Q5VY09 327 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 OGFOD2Q6N063 350 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 RETSATQ6NUM9 610 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 ABHD17CQ6PCB6 329 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 CYP26C1Q6V0L0 522 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 UNC5AQ6ZN44 842 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 CCDC129Q6ZRS4 1044 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 ZNF438Q7Z4V0 828 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 BRAPQ7Z569 592 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 MILR1Q7Z6M3 343 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 SAPCD2Q86UD0 394 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 CCNJLQ8IV13 435 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 FTSJ3Q8IY81 847 aaKnown RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 ZNF713Q8N859 430 aaPredicted RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 C1orf162Q8NEQ5 155 aaPredicted RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 ZNF417Q8TAU3 575 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 NSUN6Q8TEA1 469 aaKnown RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 DDX11Q96FC9 970 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 CDHR1Q96JP9 859 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 CAPNS2Q96L46 248 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 SCLT1Q96NL6 688 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 ZNF587Q96SQ5 575 aaPredicted RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 MDFIQ99750 246 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 LGR4Q9BXB1 951 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 ZCCHC2Q9C0B9 1178 aaKnown RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 PRR36Q9H6K5 1346 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 SLC52A2Q9HAB3 445 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 KIAA1586Q9HCI6 787 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 SEC31BQ9NQW1 1179 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 ANKEF1Q9NU02 776 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 GGA3Q9NZ52 723 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 MARK1Q9P0L2 795 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 DICER1Q9UPY3 1922 aaKnown RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 RTCBQ9Y3I0 505 aaKnown RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 CRYBG1Q9Y4K1 1723 aa3.57□□□□□ -1.84
VPS35-209ENST00000568642 FLNBO75369 2602 aaKnown RBP3.57□□□□□ -1.84
VPS35-209ENST00000568642 ARHGEF10O15013 1369 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 ELOA3CA0A087WX78 387 aaPredicted RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 TRBV23-1A0A0A0MS06 115 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 DCDC2BA2VCK2 349 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 GLTPD2A6NH11 291 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 ELOA3DA6NLF2 546 aaPredicted RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 K7ENM7 598 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 SOX1O00570 391 aaPredicted RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 ZEB2O60315 1214 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 PLOD3O60568 738 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 ADAMTS4O75173 837 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 GFPT2O94808 682 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 ZBED1O96006 694 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 EGFRP00533 1210 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 IMPDH2P12268 514 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 NID1P14543 1247 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 RAC2P15153 192 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 PSMA3P25788 255 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 GRIK1P39086 918 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 ADCYAP1R1P41586 468 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 GRK6P43250 576 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 IREB2P48200 963 aaKnown RBP3.56□□□□□ -1.84
VPS35-209ENST00000568642 IDH3AP50213 366 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 BPIFB3P59826 476 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 KRT83P78385 493 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 DSG1Q02413 1049 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 NUCB1Q02818 461 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 BIRC3Q13489 604 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 SEMA5AQ13591 1074 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 TRIM14Q14142 442 aa3.56□□□□□ -1.84
VPS35-209ENST00000568642 ELOA3BQ3SY89 546 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms