RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 GPNMBQ14956 572 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 CYP2W1Q8TAV3 490 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 CUL5Q93034 780 aa15.88■□□□□ 0.13
CLN3-235ENST00000568497 NSUN3Q9H649 340 aaKnown RBP15.88■□□□□ 0.13
CLN3-235ENST00000568497 TMEM221A6NGB7 291 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 M0R296 226 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 CXCL10P02778 98 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 FDPSP14324 419 aaKnown RBP15.87■□□□□ 0.13
CLN3-235ENST00000568497 SP4Q02446 784 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 GPM6BQ13491 265 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 PPP2R5BQ15173 497 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 STXBP2Q15833 593 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 RPAINQ86UA6 219 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 VSIG10LQ86VR7 867 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 EDAQ92838 391 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 ATOH1Q92858 354 aaPredicted RBP15.87■□□□□ 0.13
CLN3-235ENST00000568497 GTF3C6Q969F1 213 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 TBC1D32Q96NH3 1257 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 RIC8AQ9NPQ8 531 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 KIAA1217Q5T5P2 1943 aa15.87■□□□□ 0.13
CLN3-235ENST00000568497 MYH7BA7E2Y1 1941 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 A6NJR5 290 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 NKRFO15226 690 aaKnown RBP eCLIP15.86■□□□□ 0.13
CLN3-235ENST00000568497 NBNO60934 754 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 CCND2P30279 289 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 GUCY1B3Q02153 619 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 COL19A1Q14993 1142 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 SMAD2Q15796 467 aaKnown RBP15.86■□□□□ 0.13
CLN3-235ENST00000568497 TCTN1Q2MV58 587 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 EPC2Q52LR7 807 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 CCDC62Q6P9F0 684 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 MYOCDQ8IZQ8 938 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 NSUN7Q8NE18 718 aaKnown RBP15.86■□□□□ 0.13
CLN3-235ENST00000568497 AFG1LQ8WV93 481 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 ANO3Q9BYT9 981 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 MRVI1Q9Y6F6 885 aa15.86■□□□□ 0.13
CLN3-235ENST00000568497 ZFHX2Q9C0A1 2572 aaPredicted RBP15.85■□□□□ 0.13
CLN3-235ENST00000568497 PIK3CDO00329 1044 aa15.85■□□□□ 0.13
CLN3-235ENST00000568497 ARHGAP1Q07960 439 aa15.85■□□□□ 0.13
CLN3-235ENST00000568497 RBL2Q08999 1139 aa15.85■□□□□ 0.13
CLN3-235ENST00000568497 TRIM67Q6ZTA4 783 aa15.85■□□□□ 0.13
CLN3-235ENST00000568497 BMP8AQ7Z5Y6 402 aa15.85■□□□□ 0.13
CLN3-235ENST00000568497 OXER1Q8TDS5 423 aa15.85■□□□□ 0.13
CLN3-235ENST00000568497 CTAGE1Q96RT6 745 aa15.85■□□□□ 0.13
CLN3-235ENST00000568497 IWS1Q96ST2 819 aa15.85■□□□□ 0.13
CLN3-235ENST00000568497 RNF26Q9BY78 433 aaPredicted RBP15.85■□□□□ 0.13
CLN3-235ENST00000568497 ORC3Q9UBD5 711 aaPredicted RBP15.85■□□□□ 0.13
CLN3-235ENST00000568497 DDX41Q9UJV9 622 aaKnown RBP15.85■□□□□ 0.13
CLN3-235ENST00000568497 SPTBN4Q9H254 2564 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 PTPRZ1P23471 2315 aaPredicted RBP15.84■□□□□ 0.13
CLN3-235ENST00000568497 FAM205CA6NFA0 338 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 SPDYE3A6NKU9 549 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 EDIL3O43854 480 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 ATP9AO75110 1047 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 EIF3JO75822 258 aaKnown RBP15.84■□□□□ 0.13
CLN3-235ENST00000568497 AMHP03971 560 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 UBA1P22314 1058 aaKnown RBP15.84■□□□□ 0.13
CLN3-235ENST00000568497 NLRP5P59047 1200 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 NPY5RQ15761 445 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 GDF6Q6KF10 455 aaPredicted RBP15.84■□□□□ 0.13
CLN3-235ENST00000568497 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLN3-235ENST00000568497 SESTD1Q86VW0 696 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 FBXL6Q8N531 539 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 SCFD2Q8WU76 684 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 GJA10Q969M2 543 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 SAMD11Q96NU1 681 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 TRIOO75962 3097 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 FRMPD4Q14CM0 1322 aa15.84■□□□□ 0.13
CLN3-235ENST00000568497 KMT2EQ8IZD2 1858 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 C5orf42Q9H799 3197 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 H3BNC9 293 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 MBTPS2O43462 519 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 GGPS1O95749 300 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 ZNF286BP0CG31 522 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 ARP10275 920 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 CKBP12277 381 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 ITGB5P18084 799 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 CLK2P49760 499 aaKnown RBP15.83■□□□□ 0.12
CLN3-235ENST00000568497 MRPL12P52815 198 aaKnown RBP15.83■□□□□ 0.12
CLN3-235ENST00000568497 TRAF1Q13077 416 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 ANKRD1Q15327 319 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 TRIM22Q8IYM9 498 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 DHX38Q92620 1227 aaKnown RBP15.83■□□□□ 0.12
CLN3-235ENST00000568497 YME1L1Q96TA2 773 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 LIMCH1Q9UPQ0 1083 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 MYO7AQ13402 2215 aa15.83■□□□□ 0.12
CLN3-235ENST00000568497 MICAL3Q7RTP6 2002 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 NCK2O43639 380 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 CSPG5O95196 566 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 DEXIO95424 95 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 LTBRP36941 435 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 RABEP1Q15276 862 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 EARS2Q5JPH6 523 aaKnown RBP15.82■□□□□ 0.12
CLN3-235ENST00000568497 PPP1R18Q6NYC8 613 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 SP7Q8TDD2 431 aaPredicted RBP15.82■□□□□ 0.12
CLN3-235ENST00000568497 MPHOSPH6Q99547 160 aaKnown RBP15.82■□□□□ 0.12
CLN3-235ENST00000568497 ALG1Q9BT22 464 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 ZMYND12Q9H0C1 365 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 IRF2BPLQ9H1B7 796 aa15.82■□□□□ 0.12
CLN3-235ENST00000568497 UPF2Q9HAU5 1272 aaKnown RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms