RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 TSHZ1Q6ZSZ6 1077 aa18.75■□□□□ 0.59
CLK3-223ENST00000568488 FRMD5Q7Z6J6 570 aa18.75■□□□□ 0.59
CLK3-223ENST00000568488 RTN4RL1Q86UN2 441 aaPredicted RBP18.75■□□□□ 0.59
CLK3-223ENST00000568488 NPAS4Q8IUM7 802 aa18.75■□□□□ 0.59
CLK3-223ENST00000568488 ADSSL1Q8N142 457 aa18.75■□□□□ 0.59
CLK3-223ENST00000568488 KREMEN2Q8NCW0 462 aa18.75■□□□□ 0.59
CLK3-223ENST00000568488 NKD2Q969F2 451 aaPredicted RBP18.75■□□□□ 0.59
CLK3-223ENST00000568488 ZSCAN10Q96SZ4 725 aaPredicted RBP18.75■□□□□ 0.59
CLK3-223ENST00000568488 AGO3Q9H9G7 860 aaKnown RBP18.75■□□□□ 0.59
CLK3-223ENST00000568488 TSHZ2Q9NRE2 1034 aa18.75■□□□□ 0.59
CLK3-223ENST00000568488 TTC3P53804 2025 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 SPATA31C2B4DYI2 1134 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 ZNF213O14771 459 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 PPP1R11O60927 126 aaPredicted RBP18.74■□□□□ 0.59
CLK3-223ENST00000568488 STAG3L1P0CL83 205 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 GATMP50440 423 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 ZNF589Q86UQ0 364 aaPredicted RBP18.74■□□□□ 0.59
CLK3-223ENST00000568488 STAG2Q8N3U4 1231 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 TMEM105Q8N8V8 129 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 VN1R2Q8NFZ6 395 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 ATP8B4Q8TF62 1192 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 LRFN2Q9ULH4 789 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 PCDHB12Q9Y5F1 795 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 RIF1Q5UIP0 2472 aaKnown RBP18.74■□□□□ 0.59
CLK3-223ENST00000568488 ZMYM6O95789 1325 aa18.74■□□□□ 0.59
CLK3-223ENST00000568488 TECP42680 631 aa18.73■□□□□ 0.59
CLK3-223ENST00000568488 MRPS9P82933 396 aaKnown RBP18.73■□□□□ 0.59
CLK3-223ENST00000568488 PPFIA1Q13136 1202 aa18.73■□□□□ 0.59
CLK3-223ENST00000568488 DUSP6Q16828 381 aa18.73■□□□□ 0.59
CLK3-223ENST00000568488 HOMER1Q86YM7 354 aa18.73■□□□□ 0.59
CLK3-223ENST00000568488 SAMD3Q8N6K7 520 aa18.73■□□□□ 0.59
CLK3-223ENST00000568488 TUBE1Q9UJT0 475 aa18.73■□□□□ 0.59
CLK3-223ENST00000568488 B4E1Z4 1266 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 KLRF2D3W0D1 207 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 ZBTB5O15062 677 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 FIBPO43427 364 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 SRGAP2BP0DMP2 458 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 MARK3P27448 753 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 ERVFC1P60507 584 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 NMIQ13287 307 aaPredicted RBP18.72■□□□□ 0.59
CLK3-223ENST00000568488 GRIK4Q16099 956 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 LLGL2Q6P1M3 1020 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 ENAHQ8N8S7 591 aaPredicted RBP18.72■□□□□ 0.59
CLK3-223ENST00000568488 CDCA3Q99618 268 aaPredicted RBP18.72■□□□□ 0.59
CLK3-223ENST00000568488 FTHL17Q9BXU8 183 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 FAM49AQ9H0Q0 323 aaPredicted RBP18.72■□□□□ 0.59
CLK3-223ENST00000568488 S1PR5Q9H228 398 aa18.72■□□□□ 0.59
CLK3-223ENST00000568488 KAT6AQ92794 2004 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 SCG2P13521 617 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 IGBP1P78318 339 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 MRPS6P82932 125 aaKnown RBP18.71■□□□□ 0.59
CLK3-223ENST00000568488 UBE3AQ05086 875 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 SEMA3FQ13275 785 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 MTMR3Q13615 1198 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 ANKRD54Q6NXT1 300 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 UBALD2Q8IYN6 164 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 CRIPAKQ8N1N5 446 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 INPP4AQ96PE3 977 aaPredicted RBP18.71■□□□□ 0.59
CLK3-223ENST00000568488 AAASQ9NRG9 546 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 ZBTB47Q9UFB7 747 aaPredicted RBP18.71■□□□□ 0.59
CLK3-223ENST00000568488 SORCS3Q9UPU3 1222 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 NR2E1Q9Y466 385 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 KIAA1671Q9BY89 1806 aa18.71■□□□□ 0.59
CLK3-223ENST00000568488 FAM186AA6NE01 2351 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 FSD2A1L4K1 749 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 STAM2O75886 525 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 BRD1O95696 1058 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 TCF7P36402 384 aaPredicted RBP18.7■□□□□ 0.58
CLK3-223ENST00000568488 TMEM62Q0P6H9 643 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 IER5Q5VY09 327 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 ZBTB10Q96DT7 871 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 MFSD1Q9H3U5 465 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 TMEM260Q9NX78 707 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 ZSWIM5Q9P217 1185 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 RCAN3Q9UKA8 241 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 PADI3Q9ULW8 664 aa18.7■□□□□ 0.58
CLK3-223ENST00000568488 DCHS1Q96JQ0 3298 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 FGF18O76093 207 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 PAK2Q13177 524 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 PLPP4Q5VZY2 271 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 MCTP2Q6DN12 878 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 ASTLQ6HA08 431 aaPredicted RBP18.69■□□□□ 0.58
CLK3-223ENST00000568488 SYCE2Q6PIF2 218 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 THNSL1Q8IYQ7 743 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 GLG1Q92896 1179 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 MTMR8Q96EF0 704 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 PIGSQ96S52 555 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 SMOC2Q9H3U7 446 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 PCDHB7Q9Y5E2 793 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 DOCK5Q9H7D0 1870 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 PLXNA4Q9HCM2 1894 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 VPS13AQ96RL7 3174 aa18.69■□□□□ 0.58
CLK3-223ENST00000568488 TBKBP1A7MCY6 615 aa18.68■□□□□ 0.58
CLK3-223ENST00000568488 M0QZ92 97 aa18.68■□□□□ 0.58
CLK3-223ENST00000568488 APOBRQ0VD83 1088 aa18.68■□□□□ 0.58
CLK3-223ENST00000568488 TRAF1Q13077 416 aa18.68■□□□□ 0.58
CLK3-223ENST00000568488 IFIT1BQ5T764 474 aaKnown RBP18.68■□□□□ 0.58
CLK3-223ENST00000568488 TMEM184AQ6ZMB5 413 aa18.68■□□□□ 0.58
CLK3-223ENST00000568488 UBAC1Q9BSL1 405 aa18.68■□□□□ 0.58
CLK3-223ENST00000568488 ERAP1Q9NZ08 941 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms