RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 CELF2-AS1Q8N7Q2 184 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 LINS1Q8NG48 757 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 XAGE3Q8WTP9 111 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 KIF1BPQ96EK5 621 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 FMNL2Q96PY5 1086 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 PSMD1Q99460 953 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 MKNK2Q9HBH9 465 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 STAP2Q9UGK3 403 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 PGAP2Q9UHJ9 254 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 EXOC6BQ9Y2D4 811 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 MAP3K2Q9Y2U5 619 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 EYSQ5T1H1 3165 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 IBTKQ9P2D0 1353 aaPredicted RBP7.08□□□□□ -1.28
VPS39-209ENST00000568029 TRIOBPQ9H2D6 2365 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 PNMA6EA0A0J9YXQ4 647 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 SRGAP3O43295 1099 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 SURF6O75683 361 aaKnown RBP7.08□□□□□ -1.28
VPS39-209ENST00000568029 IGLV1-40P01703 118 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 MX1P20591 662 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 CHMP4BP1P59074 171 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 RSPO4Q2I0M5 234 aaPredicted RBP7.08□□□□□ -1.28
VPS39-209ENST00000568029 NBPF12Q5TAG4 269 aaPredicted RBP7.08□□□□□ -1.28
VPS39-209ENST00000568029 VHLLQ6RSH7 139 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 MOB2Q70IA6 237 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 ERC1Q8IUD2 1116 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 SLC17A8Q8NDX2 589 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 RIN3Q8TB24 985 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 KLHL6Q8WZ60 621 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 EPN3Q9H201 632 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 PRDM5Q9NQX1 630 aaPredicted RBP7.08□□□□□ -1.28
VPS39-209ENST00000568029 PRR13Q9NZ81 148 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 CHMP5Q9NZZ3 219 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 SCAF8Q9UPN6 1271 aaKnown RBP7.08□□□□□ -1.28
VPS39-209ENST00000568029 RIC1Q4ADV7 1423 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 ZSWIM8A7E2V4 1837 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 LAMB4A4D0S4 1761 aa7.08□□□□□ -1.28
VPS39-209ENST00000568029 A0A087WZG4 1122 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 YDJCA8MPS7 323 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 K7ELQ4 463 aaPredicted RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 ERC2O15083 957 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 PPIP5K2O43314 1243 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 LEFTY1O75610 366 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 RAD17O75943 681 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 ANXA1P04083 346 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 ZNF865P0CJ78 1059 aaPredicted RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 NAT2P11245 290 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 EN2P19622 333 aaPredicted RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 FSTP19883 344 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 IL6STP40189 918 aaPredicted RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 CAP1Q01518 475 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 AIMP1Q12904 312 aaKnown RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 OS9Q13438 667 aaPredicted RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 MTX1Q13505 466 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 RASGRF1Q13972 1273 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 RASA3Q14644 834 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 RABEP1Q15276 862 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 HLFQ16534 295 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 C6orf15Q6UXA7 325 aaPredicted RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 CDH24Q86UP0 819 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 NIM1KQ8IY84 436 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 ST13P5Q8NFI4 369 aaPredicted RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 OTUD7AQ8TE49 926 aaPredicted RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 GPATCH3Q96I76 525 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 ZSWIM4Q9H7M6 989 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 GBA2Q9HCG7 927 aaPredicted RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 TPX2Q9ULW0 747 aaKnown RBP7.07□□□□□ -1.28
VPS39-209ENST00000568029 CUL9Q8IWT3 2517 aa7.07□□□□□ -1.28
VPS39-209ENST00000568029 NUP98P52948 1817 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 GRM8O00222 908 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 GJB6O95452 261 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 F13BP05160 661 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 HSP90AA1P07900 732 aaKnown RBP7.06□□□□□ -1.28
VPS39-209ENST00000568029 NBPF7P0C2Y1 421 aaPredicted RBP7.06□□□□□ -1.28
VPS39-209ENST00000568029 MCCP23508 829 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 DEKP35659 375 aaKnown RBP7.06□□□□□ -1.28
VPS39-209ENST00000568029 G3BP1Q13283 466 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS39-209ENST00000568029 DOC2BQ14184 412 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 PROSER3Q2NL68 480 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 GNPTABQ3T906 1256 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 CRY2Q49AN0 593 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 TBC1D10BQ4KMP7 808 aaPredicted RBP7.06□□□□□ -1.28
VPS39-209ENST00000568029 SFRP5Q5T4F7 317 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 EEPD1Q7L9B9 569 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 PPFIBP1Q86W92 1011 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 PIWIL2Q8TC59 973 aaKnown RBP7.06□□□□□ -1.28
VPS39-209ENST00000568029 MICAL1Q8TDZ2 1067 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 MFSD14AQ96MC6 490 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 DEPDC7Q96QD5 511 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 SLKQ9H2G2 1235 aaPredicted RBP7.06□□□□□ -1.28
VPS39-209ENST00000568029 HDAC9Q9UKV0 1011 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 NIP7Q9Y221 180 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS39-209ENST00000568029 LRRC37AA6NMS7 1700 aa7.06□□□□□ -1.28
VPS39-209ENST00000568029 UTYO14607 1347 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 H0YGN5 161 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 PDPK1O15530 556 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 EPB41L2O43491 1005 aaKnown RBP7.05□□□□□ -1.28
VPS39-209ENST00000568029 DDAH1O94760 285 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 STARD3NLO95772 234 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 MYL6BP14649 208 aa7.05□□□□□ -1.28
VPS39-209ENST00000568029 FBXO46Q6PJ61 603 aaPredicted RBP7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms