RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 PLCB4Q15147 1175 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 LRCH2Q5VUJ6 765 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 TRAF7Q6Q0C0 670 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 C16orf59Q7L2K0 433 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 PLPPR4Q7Z2D5 763 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 SERINC5Q86VE9 423 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 SMAP1Q8IYB5 467 aaPredicted RBP11.09□□□□□ -0.63
CLK3-220ENST00000567992 GLG1Q92896 1179 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 LBHD1Q9BQE6 289 aaPredicted RBP11.09□□□□□ -0.63
CLK3-220ENST00000567992 UBE2OQ9C0C9 1292 aaKnown RBP11.09□□□□□ -0.63
CLK3-220ENST00000567992 FOXP1Q9H334 677 aaPredicted RBP11.09□□□□□ -0.63
CLK3-220ENST00000567992 UNC45AQ9H3U1 944 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 SMARCAD1Q9H4L7 1026 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 KAT6AQ92794 2004 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 CHD9Q3L8U1 2897 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 A0A1W2PPC1 479 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 C17orf102A2RUQ5 167 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 TREHO43280 583 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 GAS7O60861 476 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 CSF2RAP15509 400 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 U2AF2P26368 475 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLK3-220ENST00000567992 STAT5BP51692 787 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 CCL23P55773 120 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 FPGSQ05932 587 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 C1QBPQ07021 282 aaKnown RBP11.08□□□□□ -0.64
CLK3-220ENST00000567992 PTK7Q13308 1070 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 SAFBQ15424 915 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLK3-220ENST00000567992 UGCGQ16739 394 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 HABP4Q5JVS0 413 aaKnown RBP11.08□□□□□ -0.64
CLK3-220ENST00000567992 C9orf50Q5SZB4 431 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 MARCH8Q5T0T0 291 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 NOSTRINQ8IVI9 506 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 SNX21Q969T3 373 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 TEKT3Q9BXF9 490 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 SETD4Q9NVD3 440 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 PCDHA10Q9Y5I2 948 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 MAFBQ9Y5Q3 323 aaPredicted RBP11.08□□□□□ -0.64
CLK3-220ENST00000567992 TET1Q8NFU7 2136 aa11.08□□□□□ -0.64
CLK3-220ENST00000567992 ARID2Q68CP9 1835 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 MBLAC1A4D2B0 266 aaPredicted RBP11.07□□□□□ -0.64
CLK3-220ENST00000567992 WDR64B1ANS9 1081 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 ZBTB42B2RXF5 422 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 K7ELQ4 463 aaPredicted RBP11.07□□□□□ -0.64
CLK3-220ENST00000567992 EML1O00423 815 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 TBX3O15119 743 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 CHMP2AO43633 222 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 SLC26A2P50443 739 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 SPIRE1Q08AE8 756 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 PPFIA1Q13136 1202 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 PPP2R5CQ13362 524 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 GPNMBQ14956 572 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 GRIK4Q16099 956 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 SWSAP1Q6NVH7 229 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 MIS18BP1Q6P0N0 1132 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 TDHQ8IZJ6 230 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 CAGE1Q8TC20 777 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 ATP8B4Q8TF62 1192 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 ATP6V0A1Q93050 837 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 ZBTB10Q96DT7 871 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 SCLYQ96I15 445 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 FAM20AQ96MK3 541 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 MTMR9Q96QG7 549 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 NAP1L4Q99733 375 aaKnown RBP11.07□□□□□ -0.64
CLK3-220ENST00000567992 TMEM60Q9H2L4 133 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 AZI2Q9H6S1 392 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 ZNF302Q9NR11 478 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 DISC1Q9NRI5 854 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 SMC3Q9UQE7 1217 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 NOD1Q9Y239 953 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.07□□□□□ -0.64
CLK3-220ENST00000567992 PTPRSQ13332 1948 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 NRCAMQ92823 1304 aa11.07□□□□□ -0.64
CLK3-220ENST00000567992 BACH1O14867 736 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 ZNF862O60290 1169 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 PSAPP07602 524 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 IQCF3P0C7M6 154 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 CKBP12277 381 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 INSRRP14616 1297 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 SFNP31947 248 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 TOB1P50616 345 aaPredicted RBP11.06□□□□□ -0.64
CLK3-220ENST00000567992 JAK3P52333 1124 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 PPIGQ13427 754 aaKnown RBP eCLIP11.06□□□□□ -0.64
CLK3-220ENST00000567992 BFSP2Q13515 415 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 MBTPS1Q14703 1052 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 SHHQ15465 462 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 FAM160B1Q5W0V3 765 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 RUFY4Q6ZNE9 571 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 TMEM199Q8N511 208 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 RDM1Q8NG50 284 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 TRAPPC12Q8WVT3 735 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.06□□□□□ -0.64
CLK3-220ENST00000567992 IL23AQ9NPF7 189 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 GABBR1Q9UBS5 961 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 KIF3AQ9Y496 699 aa11.06□□□□□ -0.64
CLK3-220ENST00000567992 POTEB3A0JP26 581 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 SOX1O00570 391 aaPredicted RBP11.05□□□□□ -0.64
CLK3-220ENST00000567992 NEMFO60524 1076 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 STBD1O95210 358 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 ACRP10323 421 aa11.05□□□□□ -0.64
CLK3-220ENST00000567992 SELPP16109 830 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms