RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 PDRG1Q9NUG6 133 aa12.73□□□□□ -0.37
CDH3-206ENST00000567674 RNF216Q9NWF9 866 aaPredicted RBP12.73□□□□□ -0.37
CDH3-206ENST00000567674 NAP1L2Q9ULW6 460 aaPredicted RBP12.73□□□□□ -0.37
CDH3-206ENST00000567674 COL1A2P08123 1366 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 STK36Q9NRP7 1315 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 IGLV3-22A0A075B6J6 115 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 CYP3A7-CYP3A51PA0A087WV96 503 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 IPO5O00410 1097 aaKnown RBP12.72□□□□□ -0.37
CDH3-206ENST00000567674 TREHO43280 583 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 HBP1O60381 514 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 CYP3A7P24462 503 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 THPOP40225 353 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 CHMP4BP1P59074 171 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 ACTR2P61160 394 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 WDR5P61964 334 aaKnown RBP12.72□□□□□ -0.37
CDH3-206ENST00000567674 MKRN4PQ13434 485 aaPredicted RBP12.72□□□□□ -0.37
CDH3-206ENST00000567674 ODR4Q5SWX8 454 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 FAM160B1Q5W0V3 765 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 MIS18BP1Q6P0N0 1132 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 ABHD15Q6UXT9 468 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 RAB11FIP4Q86YS3 637 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 RDM1Q8NG50 284 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 PPM1EQ8WY54 764 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 WASF1Q92558 559 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 SAMD11Q96NU1 681 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 RIT2Q99578 217 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 LRFN3Q9BTN0 628 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 TCEAL9Q9UHQ7 104 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 INSL6Q9Y581 213 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 TRANK1O15050 2925 aa12.72□□□□□ -0.37
CDH3-206ENST00000567674 KDM3AQ9Y4C1 1321 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 CHD7Q9P2D1 2997 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 GJB5O95377 273 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 AMHP03971 560 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 CPA1P15085 419 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 PPFIA1Q13136 1202 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 IER5Q5VY09 327 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 PLA2G4DQ86XP0 818 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 LMBR1Q8WVP7 490 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 SLC26A6Q9BXS9 759 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 FTHL17Q9BXU8 183 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 BCAS3Q9H6U6 928 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 SETD4Q9NVD3 440 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 TUBE1Q9UJT0 475 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 PCDHA4Q9UN74 947 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 CEP131Q9UPN4 1083 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 PCDHA2Q9Y5H9 948 aa12.71□□□□□ -0.37
CDH3-206ENST00000567674 SMIM35A0A1B0GVV1 85 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 FAM86B1E9PN63 330 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 DHX15O43143 795 aaKnown RBP12.7□□□□□ -0.38
CDH3-206ENST00000567674 PFKFB2O60825 505 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 FAM86B2P0C5J1 330 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 ARP10275 920 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 SFNP31947 248 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 NLRP5P59047 1200 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 ZNF200P98182 395 aaPredicted RBP12.7□□□□□ -0.38
CDH3-206ENST00000567674 CDC42EP1Q00587 391 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 ITGB3BPQ13352 177 aaPredicted RBP12.7□□□□□ -0.38
CDH3-206ENST00000567674 HIC1Q14526 733 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 GRIK4Q16099 956 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 Q4G0T1 1027 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 ZNF484Q5JVG2 852 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 UTP14CQ5TAP6 766 aaKnown RBP12.7□□□□□ -0.38
CDH3-206ENST00000567674 PPP2R2DQ66LE6 453 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 CYP2W1Q8TAV3 490 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 PHKBQ93100 1093 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 TOP1MTQ969P6 601 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 ZFP91Q96JP5 570 aaPredicted RBP12.7□□□□□ -0.38
CDH3-206ENST00000567674 FAM167AQ96KS9 214 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 ZNF577Q9BSK1 485 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 PCDHA10Q9Y5I2 948 aa12.7□□□□□ -0.38
CDH3-206ENST00000567674 MAFBQ9Y5Q3 323 aaPredicted RBP12.7□□□□□ -0.38
CDH3-206ENST00000567674 TRIP12Q14669 1992 aaPredicted RBP12.69□□□□□ -0.38
CDH3-206ENST00000567674 POTEB3A0JP26 581 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 GRXCR1A8MXD5 290 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 M0QZ92 97 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 M0R2N6 131 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 TLL1O43897 1013 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 PSAPP07602 524 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 PBX2P40425 430 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 CCT2P78371 535 aaKnown RBP12.69□□□□□ -0.38
CDH3-206ENST00000567674 HTRA4P83105 476 aaPredicted RBP12.69□□□□□ -0.38
CDH3-206ENST00000567674 MBTPS1Q14703 1052 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 TMEM31Q5JXX7 168 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 MARCH8Q5T0T0 291 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 JAKMIP3Q5VZ66 844 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 POTEBQ6S5H4 581 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 DBF4BQ8NFT6 615 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 ATP8B4Q8TF62 1192 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 BBXQ8WY36 941 aaPredicted RBP12.69□□□□□ -0.38
CDH3-206ENST00000567674 PCYT2Q99447 389 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 SLKQ9H2G2 1235 aaPredicted RBP12.69□□□□□ -0.38
CDH3-206ENST00000567674 TSPYL2Q9H2G4 693 aaPredicted RBP12.69□□□□□ -0.38
CDH3-206ENST00000567674 NKX2-4Q9H2Z4 354 aa12.69□□□□□ -0.38
CDH3-206ENST00000567674 YBX2Q9Y2T7 364 aaKnown RBP12.69□□□□□ -0.38
CDH3-206ENST00000567674 COL4A6Q14031 1691 aa12.68□□□□□ -0.38
CDH3-206ENST00000567674 WDR64B1ANS9 1081 aa12.68□□□□□ -0.38
CDH3-206ENST00000567674 MAGEB2O15479 319 aa12.68□□□□□ -0.38
CDH3-206ENST00000567674 INSRRP14616 1297 aa12.68□□□□□ -0.38
CDH3-206ENST00000567674 GCFC2P16383 781 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms