RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 DLG3Q92796 817 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 CLIC6Q96NY7 704 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 KCNH7Q9NS40 1196 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 SPATA6Q9NWH7 488 aaPredicted RBP4.84□□□□□ -1.63
VPS35-203ENST00000562420 SAMD15Q9P1V8 674 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 TNPO3Q9Y5L0 923 aaKnown RBP4.84□□□□□ -1.63
VPS35-203ENST00000562420 B3GALT1Q9Y5Z6 326 aa4.84□□□□□ -1.63
VPS35-203ENST00000562420 C9orf118A6NHY6 69 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 FAM90A27PA6NNH2 459 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 CBX4O00257 560 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 MAFO75444 373 aaPredicted RBP4.83□□□□□ -1.64
VPS35-203ENST00000562420 GLRX3O76003 335 aaKnown RBP4.83□□□□□ -1.64
VPS35-203ENST00000562420 LTFP02788 710 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 C4BPAP04003 597 aaKnown RBP4.83□□□□□ -1.64
VPS35-203ENST00000562420 ZNF28P17035 718 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 AOAHP28039 575 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 FNTBP49356 437 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 GRIN1Q05586 938 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 ZNF460Q14592 562 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 TTLL10Q6ZVT0 673 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 LRRTM3Q86VH5 581 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 CARFQ8N187 725 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 C2orf69Q8N8R5 385 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 IGDCC4Q8TDY8 1250 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 KCNC2Q96PR1 638 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 CABP5Q9NP86 173 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 B4GALT6Q9UBX8 382 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 WASF3Q9UPY6 502 aa4.83□□□□□ -1.64
VPS35-203ENST00000562420 FAM83GA6ND36 823 aa4.82□□□□□ -1.64
VPS35-203ENST00000562420 HIP1RO75146 1068 aa4.82□□□□□ -1.64
VPS35-203ENST00000562420 KRT15P19012 456 aa4.82□□□□□ -1.64
VPS35-203ENST00000562420 SARSP49591 514 aaKnown RBP4.82□□□□□ -1.64
VPS35-203ENST00000562420 IRF9Q00978 393 aa4.82□□□□□ -1.64
VPS35-203ENST00000562420 CDCA2Q69YH5 1023 aaPredicted RBP4.82□□□□□ -1.64
VPS35-203ENST00000562420 CC2D1AQ6P1N0 951 aaPredicted RBP4.82□□□□□ -1.64
VPS35-203ENST00000562420 AHI1Q8N157 1196 aa4.82□□□□□ -1.64
VPS35-203ENST00000562420 MARCH10Q8NA82 808 aaPredicted RBP4.82□□□□□ -1.64
VPS35-203ENST00000562420 DDX1Q92499 740 aaKnown RBP4.82□□□□□ -1.64
VPS35-203ENST00000562420 WNK4Q96J92 1243 aa4.82□□□□□ -1.64
VPS35-203ENST00000562420 KRTAP9-3Q9BYQ3 159 aa4.82□□□□□ -1.64
VPS35-203ENST00000562420 RIC8BQ9NVN3 520 aa4.82□□□□□ -1.64
VPS35-203ENST00000562420 ADAMTS20P59510 1910 aa4.82□□□□□ -1.64
VPS35-203ENST00000562420 M0R2C6 588 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 TRAF5O00463 557 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 TRIM13O60858 407 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 INHBBP09529 407 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 JMJD7P0C870 316 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 ZBTB48P10074 688 aaPredicted RBP4.81□□□□□ -1.64
VPS35-203ENST00000562420 SLURP1P55000 103 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 SKIDA1Q1XH10 827 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 CFAP100Q494V2 611 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 PIK3R6Q5UE93 754 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 RBM12BQ8IXT5 1001 aaKnown RBP4.81□□□□□ -1.64
VPS35-203ENST00000562420 ZNF526Q8TF50 670 aaPredicted RBP4.81□□□□□ -1.64
VPS35-203ENST00000562420 SLKQ9H2G2 1235 aaPredicted RBP4.81□□□□□ -1.64
VPS35-203ENST00000562420 KCND1Q9NSA2 647 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 BTBD7Q9P203 1132 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 MAPRE3Q9UPY8 281 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 ASB1Q9Y576 335 aa4.81□□□□□ -1.64
VPS35-203ENST00000562420 GSG1L2A8MUP6 293 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 SASH1O94885 1247 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 CLSTN1O94985 981 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 COL6A1P12109 1028 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 PTGS1P23219 599 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 PFKPQ01813 784 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 SMAD4Q13485 552 aaKnown RBP4.8□□□□□ -1.64
VPS35-203ENST00000562420 RTP5Q14D33 572 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 SMAD2Q15796 467 aaKnown RBP4.8□□□□□ -1.64
VPS35-203ENST00000562420 TMC5Q6UXY8 1006 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 CXXC5Q7LFL8 322 aaKnown RBP4.8□□□□□ -1.64
VPS35-203ENST00000562420 ADAMTS17Q8TE56 1095 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 YTHDC1Q96MU7 727 aaKnown RBP4.8□□□□□ -1.64
VPS35-203ENST00000562420 ACSS2Q9NR19 701 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 PRKAB1Q9Y478 270 aa4.8□□□□□ -1.64
VPS35-203ENST00000562420 A0A087X0B3 334 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.79□□□□□ -1.64
VPS35-203ENST00000562420 PRAMEF25A6NGN4 478 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 SCDO00767 359 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 FOXP2O15409 715 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 F2P00734 622 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 KNG1P01042 644 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 CYP17A1P05093 508 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 ZEB1P37275 1124 aaPredicted RBP4.79□□□□□ -1.64
VPS35-203ENST00000562420 KCNC1P48547 511 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 CTSWP56202 376 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 DSG1Q02413 1049 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 SEC23AQ15436 765 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 STILQ15468 1287 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 CPZQ66K79 652 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 FSTL4Q6MZW2 842 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 DPP8Q6V1X1 898 aaPredicted RBP4.79□□□□□ -1.64
VPS35-203ENST00000562420 ZNF761Q86XN6 746 aaPredicted RBP4.79□□□□□ -1.64
VPS35-203ENST00000562420 NME9Q86XW9 330 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 REXO1L1PQ8IX06 675 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 ZCCHC14Q8WYQ9 949 aaKnown RBP4.79□□□□□ -1.64
VPS35-203ENST00000562420 E2F7Q96AV8 911 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 SCYL1Q96KG9 808 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 TARS2Q9BW92 718 aaKnown RBP4.79□□□□□ -1.64
VPS35-203ENST00000562420 MTFR1LQ9H019 292 aa4.79□□□□□ -1.64
VPS35-203ENST00000562420 PARD6AQ9NPB6 346 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms