RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 CES2O00748 559 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 PLA2G4BP0C869 781 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 SLC9A1P19634 815 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 TMOD1P28289 359 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 ECHS1P30084 290 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 ACTN3Q08043 901 aaPredicted RBP15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 ZNF844Q08AG5 666 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 PWP2Q15269 919 aaKnown RBP15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 UAP1Q16222 522 aaPredicted RBP15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 TPTE2Q6XPS3 522 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 SCFD1Q8WVM8 642 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 HAS1Q92839 578 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 JPH2Q9BR39 696 aaPredicted RBP15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 VCPKMTQ9H867 229 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 FBXL5Q9UKA1 691 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 HDAC9Q9UKV0 1011 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 NOC2LQ9Y3T9 749 aaKnown RBP15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 KDM3AQ9Y4C1 1321 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 GOLGA6L7A0A1B0GV03 622 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 NR2F2P24468 414 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 MAP2K2P36507 400 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 MARSP56192 900 aaKnown RBP15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 ALKBH5Q6P6C2 394 aaKnown RBP15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 PEX26Q7Z412 305 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 ZNF804AQ7Z570 1209 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 CCDC13Q8IYE1 715 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 EIF1ADQ8N9N8 165 aaKnown RBP15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 ACTRT1Q8TDG2 376 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 NEUROG2Q9H2A3 272 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 BIRC3Q13489 604 aa15.27■□□□□ 0.04
VPS9D1-202ENST00000561976 IRF2BP2Q7Z5L9 587 aa15.27■□□□□ 0.04
VPS9D1-202ENST00000561976 METTL13Q8N6R0 699 aa15.27■□□□□ 0.04
VPS9D1-202ENST00000561976 CCDC114Q96M63 670 aa15.27■□□□□ 0.04
VPS9D1-202ENST00000561976 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.27■□□□□ 0.046e-6■■□□□ 11.7
VPS9D1-202ENST00000561976 KCTD10Q9H3F6 313 aa15.27■□□□□ 0.04
VPS9D1-202ENST00000561976 AMACRQ9UHK6 382 aa15.27■□□□□ 0.04
VPS9D1-202ENST00000561976 NAGPAQ9UK23 515 aa15.27■□□□□ 0.04
VPS9D1-202ENST00000561976 NAV1Q8NEY1 1877 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 POTEB3A0JP26 581 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 BTNL10A8MVZ5 291 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 POTECB2RU33 542 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 H0YGN5 161 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 DAPK3O43293 454 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 RDXP35241 583 aaKnown RBP15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 CDR1P51861 262 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 POTEBQ6S5H4 581 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 NOVA2Q9UNW9 492 aaKnown RBP15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 NFS1Q9Y697 457 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 BZW2Q9Y6E2 419 aaKnown RBP15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 IRS2Q9Y4H2 1338 aa15.27■□□□□ 0.03
VPS9D1-202ENST00000561976 SRRM3A6NNA2 597 aaPredicted RBP15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 UCHL3P15374 230 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 FLT3P36888 993 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 MTMR3Q13615 1198 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 ASPRV1Q53RT3 343 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 DCAF17Q5H9S7 520 aaPredicted RBP15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 CALR3Q96L12 384 aaKnown RBP15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 KLC4Q9NSK0 619 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 ARMCX3Q9UH62 379 aaPredicted RBP15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 GGA2Q9UJY4 613 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 PCDHA2Q9Y5H9 948 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 COL14A1Q05707 1796 aaKnown RBP15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 BACH1O14867 736 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 FLOT1O75955 427 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 PPP2R2AP63151 447 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 EXOC3L4Q17RC7 722 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 TCERG1LQ5VWI1 586 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 LRRC57Q8N9N7 239 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 CUL5Q93034 780 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 CD248Q9HCU0 757 aa15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 DDX20Q9UHI6 824 aaKnown RBP15.26■□□□□ 0.03
VPS9D1-202ENST00000561976 CCDC188H7C350 402 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 ITGA4P13612 1032 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 SMTNP53814 917 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 KRT71Q3SY84 523 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 DAAM2Q86T65 1068 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 VPS36Q86VN1 386 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 CLEC10AQ8IUN9 316 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 TPCN2Q8NHX9 752 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 CCDC26Q8TAB7 109 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 LMBR1Q8WVP7 490 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 DPH5Q9H2P9 285 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 SLC12A6Q9UHW9 1150 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 LEMD3Q9Y2U8 911 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 TRAPPC3O43617 180 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 AFPP02771 609 aaKnown RBP15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 CYP11B2P19099 503 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 TM4SF1P30408 202 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 MRPL12P52815 198 aaKnown RBP15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 DDR1Q08345 913 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 IFFO1Q0D2I5 559 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 C6orf89Q6UWU4 347 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 PPP4R3CPQ6ZMV5 832 aa15.25■□□□□ 0.03
VPS9D1-202ENST00000561976 PNMA6FA0A0J9YX94 578 aa15.24■□□□□ 0.03
VPS9D1-202ENST00000561976 TTI1O43156 1089 aa15.24■□□□□ 0.03
VPS9D1-202ENST00000561976 H2AFZP0C0S5 128 aa15.24■□□□□ 0.03
VPS9D1-202ENST00000561976 PLCG2P16885 1265 aa15.24■□□□□ 0.03
VPS9D1-202ENST00000561976 BRD2P25440 801 aaKnown RBP15.24■□□□□ 0.03
VPS9D1-202ENST00000561976 MAGOHP61326 146 aaKnown RBP15.24■□□□□ 0.03
VPS9D1-202ENST00000561976 DHX9Q08211 1270 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms