RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 KAT6AQ92794 2004 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 SIP14410 1827 aa10.51□□□□□ -0.73
HDDC3-204ENST00000559834 SPTBN5Q9NRC6 3674 aaKnown RBP10.51□□□□□ -0.73
HDDC3-204ENST00000559834 FAM86C2PA6NEL3 165 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 SH2B2O14492 632 aaPredicted RBP10.5□□□□□ -0.73
HDDC3-204ENST00000559834 PLEKHA8P1O95397 391 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 STAG3L1P0CL83 205 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 HOXD11P31277 338 aaPredicted RBP10.5□□□□□ -0.73
HDDC3-204ENST00000559834 MGAT3Q09327 533 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 COL19A1Q14993 1142 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 NAALADL2Q58DX5 795 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 FBXO47Q5MNV8 452 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 CMTR1Q8N1G2 835 aaKnown RBP10.5□□□□□ -0.73
HDDC3-204ENST00000559834 NME8Q8N427 588 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 CCDC82Q8N4S0 544 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 CLP1Q92989 425 aaKnown RBP10.5□□□□□ -0.73
HDDC3-204ENST00000559834 PPP2R3CQ969Q6 453 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 UIMC1Q96RL1 719 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 SDF4Q9BRK5 362 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 JPH1Q9HDC5 661 aaPredicted RBP10.5□□□□□ -0.73
HDDC3-204ENST00000559834 PKD2L1Q9P0L9 805 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 TELO2Q9Y4R8 837 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 CDY2AQ9Y6F7 541 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 ADGRA3Q8IWK6 1321 aa10.5□□□□□ -0.73
HDDC3-204ENST00000559834 DCXO43602 365 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 DGKIO75912 1065 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 FOSP01100 380 aaPredicted RBP10.49□□□□□ -0.73
HDDC3-204ENST00000559834 INSRRP14616 1297 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 STAT5BP51692 787 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 IGBP1P78318 339 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 MRPS6P82932 125 aaKnown RBP10.49□□□□□ -0.73
HDDC3-204ENST00000559834 MARCH8Q5T0T0 291 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 PLPPR4Q7Z2D5 763 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 HEATR3Q7Z4Q2 680 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 ADHFE1Q8IWW8 467 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 P2RX5Q93086 422 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 ZNF689Q96CS4 500 aaPredicted RBP10.49□□□□□ -0.73
HDDC3-204ENST00000559834 POP1Q99575 1024 aaKnown RBP10.49□□□□□ -0.73
HDDC3-204ENST00000559834 MXRA8Q9BRK3 442 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 FAM49AQ9H0Q0 323 aaPredicted RBP10.49□□□□□ -0.73
HDDC3-204ENST00000559834 KCNH7Q9NS40 1196 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 RNF216Q9NWF9 866 aaPredicted RBP10.49□□□□□ -0.73
HDDC3-204ENST00000559834 SLC9A2Q9UBY0 812 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 TRPC6Q9Y210 931 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 PCDHA2Q9Y5H9 948 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 COL4A4P53420 1690 aaPredicted RBP10.49□□□□□ -0.73
HDDC3-204ENST00000559834 BDP1A6H8Y1 2624 aa10.49□□□□□ -0.73
HDDC3-204ENST00000559834 hCG_1642624A0A1W2PR95 340 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 POTEB3A0JP26 581 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 RBAK-RBAKDNI3L0D1 243 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 SLC27A2O14975 620 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 GRM6O15303 877 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 RXRAP19793 462 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 CD52P31358 61 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 SLC26A2P50443 739 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 UBE2SQ16763 222 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 CTC1Q2NKJ3 1217 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 ODR4Q5SWX8 454 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 RNF20Q5VTR2 975 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 POTEBQ6S5H4 581 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 TMTC3Q6ZXV5 915 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 NPAS4Q8IUM7 802 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 CMTR2Q8IYT2 770 aaKnown RBP10.48□□□□□ -0.73
HDDC3-204ENST00000559834 CELF4Q9BZC1 486 aaKnown RBP10.48□□□□□ -0.73
HDDC3-204ENST00000559834 GLT8D2Q9H1C3 349 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 IGFLR1Q9H665 355 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 AGO3Q9H9G7 860 aaKnown RBP10.48□□□□□ -0.73
HDDC3-204ENST00000559834 RBM28Q9NW13 759 aaKnown RBP10.48□□□□□ -0.73
HDDC3-204ENST00000559834 PLAGL2Q9UPG8 496 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 TRPV2Q9Y5S1 764 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 NFASCO94856 1347 aa10.48□□□□□ -0.73
HDDC3-204ENST00000559834 COL4A6Q14031 1691 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 SMIM35A0A1B0GVV1 85 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 C19orf67A6NJJ6 358 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 MMP1P03956 469 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 LINC00271P0C7V0 271 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 ZNF76P36508 570 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 LTBRP36941 435 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 NAPAP54920 295 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 ACTR2P61160 394 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 KRT76Q01546 638 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 ZP2Q05996 745 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 HYAL1Q12794 435 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 NECTIN1Q15223 517 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 SMAD2Q15796 467 aaKnown RBP10.47□□□□□ -0.73
HDDC3-204ENST00000559834 CEP55Q53EZ4 464 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 CREB3L3Q68CJ9 461 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 SGMS1Q86VZ5 419 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 MICU3Q86XE3 530 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 PCYT2Q99447 389 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 LSG1Q9H089 658 aaKnown RBP10.47□□□□□ -0.73
HDDC3-204ENST00000559834 RC3H2Q9HBD1 1191 aaKnown RBP10.47□□□□□ -0.73
HDDC3-204ENST00000559834 ALG13Q9NP73 1137 aaKnown RBP10.47□□□□□ -0.73
HDDC3-204ENST00000559834 RIC8AQ9NPQ8 531 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 LRFN2Q9ULH4 789 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 PADI3Q9ULW8 664 aa10.47□□□□□ -0.73
HDDC3-204ENST00000559834 MYO7AQ13402 2215 aa10.46□□□□□ -0.73
HDDC3-204ENST00000559834 MUC3AQ02505 3323 aa10.46□□□□□ -0.73
HDDC3-204ENST00000559834 hCG_1984214I3L0E3 225 aa10.46□□□□□ -0.73
HDDC3-204ENST00000559834 HBP1O60381 514 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms