RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 SH3GLB2Q9NR46 395 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 NPHP3-ACAD11A0A0J9YXS1 232 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 RASGRF2O14827 1237 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 PLA2G4BP0C869 781 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 LMNB1P20700 586 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 RPS8P62241 208 aaKnown RBP7.72□□□□□ -1.17
USP3-210ENST00000559192 MYO1EQ12965 1108 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 PSMD6Q15008 389 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 CCDC92Q53HC0 331 aaPredicted RBP7.72□□□□□ -1.17
USP3-210ENST00000559192 EARS2Q5JPH6 523 aaKnown RBP7.72□□□□□ -1.17
USP3-210ENST00000559192 VPS52Q8N1B4 723 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 MMGT1Q8N4V1 131 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 PRMT1Q99873 361 aaKnown RBP7.72□□□□□ -1.17
USP3-210ENST00000559192 BRIP1Q9BX63 1249 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 ECT2Q9H8V3 914 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 AGTPBP1Q9UPW5 1226 aa7.72□□□□□ -1.17
USP3-210ENST00000559192 TULP2O00295 520 aa7.71□□□□□ -1.17
USP3-210ENST00000559192 RNF8O76064 485 aa7.71□□□□□ -1.17
USP3-210ENST00000559192 ATF2P15336 505 aa7.71□□□□□ -1.17
USP3-210ENST00000559192 PMS1P54277 932 aaKnown RBP7.71□□□□□ -1.17
USP3-210ENST00000559192 BIRC3Q13489 604 aa7.71□□□□□ -1.17
USP3-210ENST00000559192 SLC44A5Q8NCS7 719 aa7.71□□□□□ -1.17
USP3-210ENST00000559192 ADAMTS13Q76LX8 1427 aa7.71□□□□□ -1.17
USP3-210ENST00000559192 SIGLEC1Q9BZZ2 1709 aa7.71□□□□□ -1.17
USP3-210ENST00000559192 E9PMD0 336 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 POC1B-GALNT4F8VUJ3 575 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 PMS2P54278 862 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 NTRK3Q16288 839 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 NUGGCQ68CJ6 796 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 ZNF449Q6P9G9 518 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 ARHGAP24Q8N264 748 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 CASKIN2Q8WXE0 1202 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 TRIM51Q9BSJ1 452 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 OVOS2A0A0G2JMS6 1433 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 SFI1A8K8P3 1242 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 SARSP49591 514 aaKnown RBP7.71□□□□□ -1.18
USP3-210ENST00000559192 CCDC62Q6P9F0 684 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 SH3RF3Q8TEJ3 882 aaPredicted RBP7.71□□□□□ -1.18
USP3-210ENST00000559192 SEC16BQ96JE7 1060 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 GPR101Q96P66 508 aaPredicted RBP7.71□□□□□ -1.18
USP3-210ENST00000559192 SLIT1O75093 1534 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 ATP2A2P16615 1042 aaKnown RBP7.71□□□□□ -1.18
USP3-210ENST00000559192 RANBP1P43487 201 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 POLE2P56282 527 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 KCNB1Q14721 858 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 PAPD7Q5XG87 772 aaKnown RBP7.71□□□□□ -1.18
USP3-210ENST00000559192 KAZNQ674X7 775 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 CHMP6Q96FZ7 201 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 YIPF3Q9GZM5 350 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 NBPF3Q9H094 633 aa7.71□□□□□ -1.18
USP3-210ENST00000559192 CFBP00751 764 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 SCP2P22307 547 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 RCAN1P53805 252 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 ZYXQ15942 572 aaKnown RBP7.7□□□□□ -1.18
USP3-210ENST00000559192 PPP4R3AQ6IN85 833 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 PHLDB3Q6NSJ2 640 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 USP37Q86T82 979 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 TMEM139Q8IV31 216 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.7□□□□□ -1.183e-7■□□□□ 11.3
USP3-210ENST00000559192 TMEM60Q9H2L4 133 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 K7ENM7 598 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 TTI1O43156 1089 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 RHOBTB3O94955 611 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 GAS8O95995 478 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 HARSP12081 509 aaKnown RBP7.7□□□□□ -1.18
USP3-210ENST00000559192 ACTN1P12814 892 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 FGFR4P22455 802 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 PRDX5P30044 214 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 ELF1P32519 619 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 EIF3BP55884 814 aaKnown RBP7.7□□□□□ -1.18
USP3-210ENST00000559192 SNAP25P60880 206 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 PSMD2Q13200 908 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 CYP4F22Q6NT55 531 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 FAM186BQ8IYM0 893 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 TRIM9Q9C026 710 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 PCIF1Q9H4Z3 704 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 DMGDHQ9UI17 866 aaKnown RBP7.7□□□□□ -1.18
USP3-210ENST00000559192 ZNF804BA4D1E1 1349 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 USP17L5A8MUK1 530 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 SPECC1L-ADORA2AF8WAN1 911 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 PDHBP11177 359 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 ATICP31939 592 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 KCNQ4P56696 695 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 SLC20A2Q08357 652 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 KCNH2Q12809 1159 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 C10orf76Q5T2E6 689 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 PDXDC2PQ6P474 469 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 PPM1KQ8N3J5 372 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 RUBCNQ92622 972 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 NOP53Q9NZM5 478 aaKnown RBP7.7□□□□□ -1.18
USP3-210ENST00000559192 H0Y3Z8 333 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 TDP2O95551 362 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 ECEL1O95672 775 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 MYBL2P10244 700 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 CHN1P15882 459 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 UBXN2AP68543 259 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 PPP2R5EQ16537 467 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 SDCCAG8Q86SQ7 713 aaPredicted RBP7.7□□□□□ -1.18
USP3-210ENST00000559192 SLFN12Q8IYM2 578 aa7.7□□□□□ -1.18
USP3-210ENST00000559192 KIRREL3Q8IZU9 778 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms