RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 DHX16O60231 1041 aaKnown RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 ECE2O60344 883 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 PPFIA4O75335 1185 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 HTR3BO95264 441 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 ACPPP15309 386 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 RPS6KB1P23443 525 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 RPS12P25398 132 aaKnown RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 PRDX5P30044 214 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 IARSP41252 1262 aaKnown RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 NUCB2P80303 420 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 SLC7A5Q01650 507 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 ZNF252P-AS1Q0IIN9 211 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 GRM1Q13255 1194 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 PIN1Q13526 163 aaPredicted RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 HSP90AA2PQ14568 343 aaPredicted RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 PPP2R5BQ15173 497 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 DHCR24Q15392 516 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 AKNAD1Q5T1N1 836 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 ZNF697Q5TEC3 545 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 MAP1SQ66K74 1059 aaPredicted RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 KANK3Q6NY19 840 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 UNC5AQ6ZN44 842 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 CCDC129Q6ZRS4 1044 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 SCUBE1Q8IWY4 988 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 CYP4X1Q8N118 509 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 AGBL3Q8NEM8 1001 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 ESR2Q92731 530 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 RIOK1Q9BRS2 568 aaKnown RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 TARS2Q9BW92 718 aaKnown RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 CDH19Q9H159 772 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 RUBCNLQ9H714 662 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 ARMT1Q9H993 441 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 HCSTQ9UBK5 93 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 ANAPC4Q9UJX5 808 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 MRPS23Q9Y3D9 190 aaKnown RBP5.92□□□□□ -1.46
LDLR-209ENST00000558528 SNCAIPQ9Y6H5 919 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 CENPFP49454 3210 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 MROH7-TTC4A0A0A0MT08 1334 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 FER1L6Q2WGJ9 1857 aa5.92□□□□□ -1.46
LDLR-209ENST00000558528 NRXN2Q9P2S2 1712 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 TRBV23-1A0A0A0MS06 115 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 AKAP10O43572 662 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 MYO1BO43795 1136 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 EYA4O95677 639 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 LDHAP00338 332 aaKnown RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 GHRHP01286 108 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 HLA-DOAP06340 250 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 BMP2P12643 396 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 NME1P15531 152 aaKnown RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 POU3F2P20265 443 aaPredicted RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 KLRK1P26718 216 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 CCNFP41002 786 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 BTDP43251 543 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 SUMO1P63165 101 aaKnown RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 PPARAQ07869 468 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 SPEM2Q0P670 501 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 SFSWAPQ12872 951 aaKnown RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 CDCP2Q5VXM1 449 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 CST9Q5W186 159 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 CIAPIN1Q6FI81 312 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 KIAA1211LQ6NV74 962 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 CPLX2Q6PUV4 134 aaKnown RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 NLRC3Q7RTR2 1065 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 CTU1Q7Z7A3 348 aaKnown RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 PNMA8AQ86V59 439 aaPredicted RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 IQCA1Q86XH1 822 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 TCEAL8Q8IYN2 117 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 ZNF444Q8N0Y2 327 aaPredicted RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 LCORLQ8N3X6 602 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 MIGA1Q8NAN2 632 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 ZNF274Q96GC6 653 aaPredicted RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 HHIPL1Q96JK4 782 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 ZDHHC15Q96MV8 337 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 NSUN5Q96P11 429 aaKnown RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 HHIPQ96QV1 700 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 MPHOSPH6Q99547 160 aaKnown RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 COL25A1Q9BXS0 654 aaPredicted RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 KRTAP3-3Q9BYR6 98 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 KRTAP3-2Q9BYR7 98 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 MUC3BQ9H195 1237 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 IL25Q9H293 177 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 DHX36Q9H2U1 1008 aaKnown RBP5.91□□□□□ -1.46
LDLR-209ENST00000558528 DBNDD1Q9H9R9 158 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 GPAMQ9HCL2 828 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 AATFQ9NY61 560 aaKnown RBP eCLIP5.91□□□□□ -1.46
LDLR-209ENST00000558528 SLC5A4Q9NY91 659 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 TMOD2Q9NZR1 351 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 ZIM2Q9NZV7 527 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 CHMP5Q9NZZ3 219 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 MARK1Q9P0L2 795 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 PALD1Q9ULE6 856 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 TRPM7Q96QT4 1865 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 GAKO14976 1311 aa5.91□□□□□ -1.46
LDLR-209ENST00000558528 CACNA1AO00555 2505 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 MYH3P11055 1940 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 DUOX1Q9NRD9 1551 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 CCDC196A0A1B0GTZ2 297 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 WTIPA6NIX2 430 aaPredicted RBP5.9□□□□□ -1.46
LDLR-209ENST00000558528 PTPRAP18433 802 aa5.9□□□□□ -1.46
LDLR-209ENST00000558528 PDCP20941 246 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms