RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 IRF2BP2Q7Z5L9 587 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 DDX42Q86XP3 938 aaKnown RBP eCLIP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 ZC3H3Q8IXZ2 948 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 LRRC57Q8N9N7 239 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 OR2W6PQ8NHA6 318 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 LMBR1Q8WVP7 490 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 UBLCP1Q8WVY7 318 aaPredicted RBP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 AP1M1Q9BXS5 423 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 RTFDC1Q9BY42 306 aaPredicted RBP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 FGFBP2Q9BYJ0 223 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 KCTD10Q9H3F6 313 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 KLC4Q9NSK0 619 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 NOC2LQ9Y3T9 749 aaKnown RBP12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 PCDHA2Q9Y5H9 948 aa12.93□□□□□ -0.34
VIPAS39-211ENST00000557658 KRIT1O00522 736 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 CHUKO15111 745 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 TRAPPC3O43617 180 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 PDHBP11177 359 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 BTDP43251 543 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 NOVP48745 357 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 PPP2R2AP63151 447 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 PPP1R18Q6NYC8 613 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 ZNF571Q7Z3V5 609 aaPredicted RBP12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 TEX11Q8IYF3 940 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 SCFD1Q8WVM8 642 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 HAS1Q92839 578 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 SETDB2Q96T68 719 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 SLITRK6Q9H5Y7 841 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 BCCIPQ9P287 314 aaKnown RBP eCLIP12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 ANKIB1Q9P2G1 1089 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 FBXL5Q9UKA1 691 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 PCDHA12Q9UN75 941 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 TMCO5BA8MYB1 307 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 E9PMD0 336 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 FLOT1O75955 427 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 PLA2G4BP0C869 781 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 ANXA13P27216 316 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 RDXP35241 583 aaKnown RBP12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 CDR1P51861 262 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 ALKBH5Q6P6C2 394 aaKnown RBP12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 GPBP1Q86WP2 473 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 MARCH10Q8NA82 808 aaPredicted RBP12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 CCDC26Q8TAB7 109 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 DDX47Q9H0S4 455 aaKnown RBP12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 NAGPAQ9UK23 515 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 HDAC9Q9UKV0 1011 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 KIAA1024Q9UPX6 916 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 SBF2Q86WG5 1849 aa12.92□□□□□ -0.34
VIPAS39-211ENST00000557658 LOC102724159A0A0B4J2E5 919 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 RASSF9O75901 435 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 GCFC2P16383 781 aaKnown RBP12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 PWP2Q15269 919 aaKnown RBP12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 ARMC9Q7Z3E5 817 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 PEX26Q7Z412 305 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 RPAINQ86UA6 219 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 METTL13Q8N6R0 699 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 LINC00116Q8NCU8 138 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 TPCN2Q8NHX9 752 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 CCDC114Q96M63 670 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 NEUROG2Q9H2A3 272 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 GOLPH3Q9H4A6 298 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 DDX20Q9UHI6 824 aaKnown RBP12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 LEMD3Q9Y2U8 911 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 ATP8B3O60423 1300 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 KRT18P05783 430 aaKnown RBP12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 ACTN1P12814 892 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 UCHL3P15374 230 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 PLCG2P16885 1265 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 NR2F2P24468 414 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 UBE2SQ16763 222 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 ZNF804AQ7Z570 1209 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 FRMD5Q7Z6J6 570 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 VPS36Q86VN1 386 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 NAP1L4Q99733 375 aaKnown RBP12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 JPH2Q9BR39 696 aaPredicted RBP12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 SLC40A1Q9NP59 571 aa12.91□□□□□ -0.34
VIPAS39-211ENST00000557658 PNMA6FA0A0J9YX94 578 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 DAPK3O43293 454 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 SLC26A4O43511 780 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 AFPP02771 609 aaKnown RBP12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 PAEPP09466 180 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 SLC9A1P19634 815 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 TMOD1P28289 359 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 PRKCIP41743 596 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 CACNB1Q02641 598 aaPredicted RBP12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 TPTE2Q6XPS3 522 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 SYCE1Q8N0S2 351 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 RASGEF1CQ8N431 466 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 CUL5Q93034 780 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 TACO1Q9BSH4 297 aaKnown RBP12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 FAM114A2Q9NRY5 505 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 SUCLA2Q9P2R7 463 aaPredicted RBP12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 ARMCX3Q9UH62 379 aaPredicted RBP12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 NOVA2Q9UNW9 492 aaKnown RBP12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 NHSQ6T4R5 1651 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 GPR75-ASB3A0A0A6YYF3 556 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 A0A0A6YYK5 440 aaPredicted RBP12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 NPHP3-ACAD11A0A0J9YXS1 232 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 C5orf60A6NFR6 353 aa12.9□□□□□ -0.34
VIPAS39-211ENST00000557658 H2AFZP0C0S5 128 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms