RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 GOLGA8AA7E2F4 631 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 GOLGA8BA8MQT2 603 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 H3BNC9 293 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 hCG_1984214I3L0E3 225 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 CDC45O75419 566 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 RPLP2P05387 115 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 COL9A1P20849 921 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 ADCY7P51828 1080 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 FGD1P98174 961 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 MGAT3Q09327 533 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 LPIN1Q14693 890 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 ADCK5Q3MIX3 580 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 TSGA10IPQ3SY00 556 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 MARCH8Q5T0T0 291 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 TYW1BQ6NUM6 668 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 TMEM192Q8IY95 271 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 RASEFQ8IZ41 740 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 FIBCD1Q8N539 461 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 ZNF713Q8N859 430 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 CYP2W1Q8TAV3 490 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 MRPL38Q96DV4 380 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 IL17RAQ96F46 866 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 PGBD1Q96JS3 809 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 GLT8D2Q9H1C3 349 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 UBE2ZQ9H832 354 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 NAP1L2Q9ULW6 460 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 TRPC6Q9Y210 931 aa12.65□□□□□ -0.38
CCDC88C-213ENST00000557455 NFASCO94856 1347 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 TTC3P53804 2025 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 MYH9P35579 1960 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 STXBP3O00186 592 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 HMGB1P09429 215 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 ARP10275 920 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 INSRRP14616 1297 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 ZNF76P36508 570 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 ACTR2P61160 394 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 MRPS6P82932 125 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 FUT2Q10981 343 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 AP3B2Q13367 1082 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 GPM6BQ13491 265 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 CEP55Q53EZ4 464 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 FBXO47Q5MNV8 452 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 PLPPR4Q7Z2D5 763 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 PCYT2Q99447 389 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 ANO3Q9BYT9 981 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 FAM49AQ9H0Q0 323 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 BARHL2Q9NY43 387 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 CDY2AQ9Y6F7 541 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 ATG2AQ2TAZ0 1938 aa12.64□□□□□ -0.39
CCDC88C-213ENST00000557455 EVPLQ92817 2033 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 M0QZ92 97 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 ENPP3O14638 875 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 CDC27P30260 824 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 STAT5BP51692 787 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 RCAN1P53805 252 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 PLCB4Q15147 1175 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 TIGD5Q53EQ6 642 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 IER5Q5VY09 327 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 TSHZ1Q6ZSZ6 1077 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 ZBTB10Q96DT7 871 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 C1QTNF1Q9BXJ1 281 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 AGO4Q9HCK5 861 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 FAM217BQ9NTX9 383 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 TMEM260Q9NX78 707 aa12.63□□□□□ -0.39
CCDC88C-213ENST00000557455 CCDC196A0A1B0GTZ2 297 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 POTEB3A0JP26 581 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 MEIS1O00470 390 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 KCNA5P22460 613 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 CTNNB1P35222 781 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 ADD1P35611 737 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 SREBF1P36956 1147 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 CLK2P49760 499 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 METAP2P50579 478 aaKnown RBP eCLIP12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 ITGB3BPQ13352 177 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 LEXMQ3ZCV2 418 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 POTEBQ6S5H4 581 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 BANK1Q8NDB2 785 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 TRAPPC12Q8WVT3 735 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 RWDD3Q9Y3V2 267 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 PCDHA2Q9Y5H9 948 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 ADGRA3Q8IWK6 1321 aa12.62□□□□□ -0.39
CCDC88C-213ENST00000557455 WDR81Q562E7 1941 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 KIAA1671Q9BY89 1806 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 DDX39AO00148 427 aaKnown RBP12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 ATG7O95352 703 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 RB1P06400 928 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 CPA1P15085 419 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 CD52P31358 61 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 SLC26A2P50443 739 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 TMEM62Q0P6H9 643 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 APOBRQ0VD83 1088 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 BTG3Q14201 252 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 PFKFB3Q16875 520 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 JAKMIP3Q5VZ66 844 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 FAM160B1Q5W0V3 765 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 Q6ZUG5 572 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 NIPA1Q7RTP0 329 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 NME8Q8N427 588 aa12.61□□□□□ -0.39
CCDC88C-213ENST00000557455 FTHL17Q9BXU8 183 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms