RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 TRAV20A0A0B4J274 112 aa5.99□□□□□ -1.45
SCFD1-219ENST00000556413 USP10Q14694 798 aaKnown RBP5.99□□□□□ -1.45
SCFD1-219ENST00000556413 TAX1BP1Q86VP1 789 aa5.99□□□□□ -1.45
SCFD1-219ENST00000556413 LRRC47Q8N1G4 583 aaKnown RBP5.99□□□□□ -1.45
SCFD1-219ENST00000556413 GIMAP8Q8ND71 665 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-219ENST00000556413 PCED1AQ9H1Q7 454 aa5.99□□□□□ -1.45
SCFD1-219ENST00000556413 SLC39A2Q9NP94 309 aa5.99□□□□□ -1.45
SCFD1-219ENST00000556413 POLD1P28340 1107 aa5.98□□□□□ -1.45
SCFD1-219ENST00000556413 DBPQ10586 325 aaPredicted RBP5.98□□□□□ -1.45
SCFD1-219ENST00000556413 HS1BP3Q53T59 392 aa5.98□□□□□ -1.45
SCFD1-219ENST00000556413 SLC43A3Q8NBI5 491 aa5.98□□□□□ -1.45
SCFD1-219ENST00000556413 NEIL1Q96FI4 390 aaPredicted RBP5.98□□□□□ -1.45
SCFD1-219ENST00000556413 ALG1Q9BT22 464 aa5.98□□□□□ -1.45
SCFD1-219ENST00000556413 CARD11Q9BXL7 1154 aa5.98□□□□□ -1.45
SCFD1-219ENST00000556413 TRAF6Q9Y4K3 522 aa5.98□□□□□ -1.45
SCFD1-219ENST00000556413 HS3ST3A1Q9Y663 406 aa5.98□□□□□ -1.45
SCFD1-219ENST00000556413 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.97□□□□□ -1.45
SCFD1-219ENST00000556413 TOP3AQ13472 1001 aaPredicted RBP5.97□□□□□ -1.45
SCFD1-219ENST00000556413 RAB33AQ14088 237 aa5.97□□□□□ -1.45
SCFD1-219ENST00000556413 PRKD1Q15139 912 aaPredicted RBP5.97□□□□□ -1.45
SCFD1-219ENST00000556413 HOMEZQ8IX15 550 aa5.97□□□□□ -1.45
SCFD1-219ENST00000556413 ADOQ96SZ5 270 aa5.97□□□□□ -1.45
SCFD1-219ENST00000556413 ESYT3A0FGR9 886 aa5.96□□□□□ -1.46
SCFD1-219ENST00000556413 FAM90A27PA6NNH2 459 aa5.96□□□□□ -1.46
SCFD1-219ENST00000556413 CUTAO60888 179 aa5.96□□□□□ -1.46
SCFD1-219ENST00000556413 KLF10Q13118 480 aa5.96□□□□□ -1.46
SCFD1-219ENST00000556413 BTBD8Q5XKL5 378 aa5.96□□□□□ -1.46
SCFD1-219ENST00000556413 DPH6Q7L8W6 267 aa5.96□□□□□ -1.46
SCFD1-219ENST00000556413 PTPN1P18031 435 aaKnown RBP5.95□□□□□ -1.46
SCFD1-219ENST00000556413 RAC3P60763 192 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 RNF151Q2KHN1 245 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 ZNF568Q3ZCX4 644 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 AGBL4Q5VU57 503 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 DPP8Q6V1X1 898 aaPredicted RBP5.95□□□□□ -1.46
SCFD1-219ENST00000556413 ARHGAP36Q6ZRI8 547 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 FUKQ8N0W3 1084 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 EDAQ92838 391 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 MENTQ9BUN1 341 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 SPATA9Q9BWV2 254 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 RIC8BQ9NVN3 520 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 ING1Q9UK53 422 aaPredicted RBP5.95□□□□□ -1.46
SCFD1-219ENST00000556413 SRPK3Q9UPE1 567 aa5.95□□□□□ -1.46
SCFD1-219ENST00000556413 WNT9AO14904 365 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 AMY2AP04746 511 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 AMY2BP19961 511 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 COMTP21964 271 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 PAK1Q13153 545 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 FOXE3Q13461 319 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 NOLC1Q14978 699 aaKnown RBP eCLIP5.94□□□□□ -1.46
SCFD1-219ENST00000556413 GPR19Q15760 415 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 SPATC1Q76KD6 591 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 NLGN4XQ8N0W4 816 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 ZNF669Q96BR6 464 aaPredicted RBP5.94□□□□□ -1.46
SCFD1-219ENST00000556413 ZNF341Q9BYN7 854 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 SLITRK6Q9H5Y7 841 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 ARHGAP28Q9P2N2 729 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 OAZ3Q9UMX2 235 aa5.94□□□□□ -1.46
SCFD1-219ENST00000556413 NPIPB8E9PQR5 432 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 OVOL3O00110 214 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 MAN2B1O00754 1011 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 AQP7O14520 342 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 PDE6AP16499 860 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 CR2P20023 1033 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 RRADP55042 308 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 USP39Q53GS9 565 aaKnown RBP5.93□□□□□ -1.46
SCFD1-219ENST00000556413 ZMAT1Q5H9K5 638 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 MIIPQ5JXC2 388 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 RNF207Q6ZRF8 634 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 Q6ZSN1 163 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 MAMDC2Q7Z304 686 aaPredicted RBP5.93□□□□□ -1.46
SCFD1-219ENST00000556413 MTDHQ86UE4 582 aaKnown RBP5.93□□□□□ -1.46
SCFD1-219ENST00000556413 OSTM1Q86WC4 334 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 SCUBE1Q8IWY4 988 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 PCDH19Q8TAB3 1148 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 ZNF503Q96F45 646 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 DPYSL5Q9BPU6 564 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 PCDHA8Q9Y5H6 950 aa5.93□□□□□ -1.46
SCFD1-219ENST00000556413 MATN2O00339 956 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 PLSCR1O15162 318 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 ADCY3O60266 1144 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 RAD17O75943 681 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 PYGMP11217 842 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 ETV4P43268 484 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 IL13RA1P78552 427 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 WDR72Q3MJ13 1102 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 NRN1LQ496H8 165 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 PTPRN2Q92932 1015 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 FBXW5Q969U6 566 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 SCYL1Q96KG9 808 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 TRIM55Q9BYV6 548 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 CATSPERZQ9NTU4 200 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 MSRB2Q9Y3D2 182 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 ATP23Q9Y6H3 246 aa5.92□□□□□ -1.46
SCFD1-219ENST00000556413 TRBV23-1A0A0A0MS06 115 aa5.91□□□□□ -1.46
SCFD1-219ENST00000556413 CDC14BO60729 498 aa5.91□□□□□ -1.46
SCFD1-219ENST00000556413 C6orf222P0C671 652 aaPredicted RBP5.91□□□□□ -1.46
SCFD1-219ENST00000556413 KRT15P19012 456 aa5.91□□□□□ -1.46
SCFD1-219ENST00000556413 ACO1P21399 889 aaKnown RBP5.91□□□□□ -1.46
SCFD1-219ENST00000556413 PTGS1P23219 599 aa5.91□□□□□ -1.46
SCFD1-219ENST00000556413 GJA4P35212 333 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms