RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 CYP3A7-CYP3A51PA0A087WV96 503 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 DDX39AO00148 427 aaKnown RBP23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 DHX15O43143 795 aaKnown RBP23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 TREHO43280 583 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 EFCAB14O75071 495 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 CYP3A7P24462 503 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 MARK3P27448 753 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 KRT2P35908 639 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 THPOP40225 353 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 ADAM17P78536 824 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 GRIK4Q16099 956 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 ABHD15Q6UXT9 468 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 DEFB123Q8N688 67 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 LENG9Q96B70 501 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 TUBE1Q9UJT0 475 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 TRPC6Q9Y210 931 aa23.37■■□□□ 1.33
CCDC88C-210ENST00000555995 IGKV6D-21A0A0A0MT36 114 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 WDR64B1ANS9 1081 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 RSPH10B2B2RC85 870 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 CXCL10P02778 98 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 PSAPP07602 524 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 RSPH10BP0C881 870 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 HMGN5P82970 282 aaKnown RBP23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 HIC1Q14526 733 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 RAB30Q15771 203 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 ZNF618Q5T7W0 954 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 CNKSR3Q6P9H4 555 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 NEK8Q86SG6 692 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 RPAINQ86UA6 219 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 PCYT2Q99447 389 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 KIF2CQ99661 725 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 TEKT3Q9BXF9 490 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 ZNF302Q9NR11 478 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 PCDHA10Q9Y5I2 948 aa23.36■■□□□ 1.33
CCDC88C-210ENST00000555995 GAS7O60861 476 aa23.35■■□□□ 1.33
CCDC88C-210ENST00000555995 CCNE2O96020 404 aa23.35■■□□□ 1.33
CCDC88C-210ENST00000555995 FDPSP14324 419 aaKnown RBP23.35■■□□□ 1.33
CCDC88C-210ENST00000555995 SFNP31947 248 aa23.35■■□□□ 1.33
CCDC88C-210ENST00000555995 SLC9A7Q96T83 725 aa23.35■■□□□ 1.33
CCDC88C-210ENST00000555995 COL1A2P08123 1366 aa23.35■■□□□ 1.33
CCDC88C-210ENST00000555995 WDR81Q562E7 1941 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 POTEB3A0JP26 581 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 MBLAC1A4D2B0 266 aaPredicted RBP23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 MSH4O15457 936 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 HBP1O60381 514 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 KCNJ6P48051 423 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 JAK3P52333 1124 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 PLCB4Q15147 1175 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 INF2Q27J81 1249 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 LRCH2Q5VUJ6 765 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 PDXDC2PQ6P474 469 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 POTEBQ6S5H4 581 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 RDM1Q8NG50 284 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 PHOSPHO2Q8TCD6 241 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 SLC5A5Q92911 643 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 FAM167AQ96KS9 214 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 MBOAT7Q96N66 472 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 DDX25Q9UHL0 483 aaKnown RBP23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 MSRAQ9UJ68 235 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 SAMM50Q9Y512 469 aa23.34■■□□□ 1.33
CCDC88C-210ENST00000555995 MMP1P03956 469 aa23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 DNAJB2P25686 324 aa23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 SAFBQ15424 915 aaKnown RBP eCLIP23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 LETM2Q2VYF4 491 aa23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 PPP4R3AQ6IN85 833 aa23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 CCDC60Q8IWA6 550 aaPredicted RBP23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 CCDC83Q8IWF9 413 aa23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 ATP8B4Q8TF62 1192 aa23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 WNT8BQ93098 351 aa23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 VWCEQ96DN2 955 aa23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 CXXC1Q9P0U4 656 aaPredicted RBP23.33■■□□□ 1.33
CCDC88C-210ENST00000555995 TET1Q8NFU7 2136 aa23.33■■□□□ 1.32
CCDC88C-210ENST00000555995 ABHD14A-ACY1A0A1B0GW23 586 aa23.32■■□□□ 1.32
CCDC88C-210ENST00000555995 JAK2O60674 1132 aa23.32■■□□□ 1.32
CCDC88C-210ENST00000555995 TDP2O95551 362 aa23.32■■□□□ 1.32
CCDC88C-210ENST00000555995 INSRRP14616 1297 aa23.32■■□□□ 1.32
CCDC88C-210ENST00000555995 ATP2A2P16615 1042 aaKnown RBP23.32■■□□□ 1.32
CCDC88C-210ENST00000555995 TRAF7Q6Q0C0 670 aa23.32■■□□□ 1.32
CCDC88C-210ENST00000555995 PIK3AP1Q6ZUJ8 805 aa23.32■■□□□ 1.32
CCDC88C-210ENST00000555995 CEP131Q9UPN4 1083 aa23.32■■□□□ 1.32
CCDC88C-210ENST00000555995 GBF1Q92538 1859 aa23.32■■□□□ 1.32
CCDC88C-210ENST00000555995 NBNO60934 754 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 MCM2P49736 904 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 IGBP1P78318 339 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 IKBKEQ14164 716 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 ZNF484Q5JVG2 852 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 FAM26DQ5JW98 314 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 SWSAP1Q6NVH7 229 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 CKAP2LQ8IYA6 745 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 BBXQ8WY36 941 aaPredicted RBP23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 TIFAQ96CG3 184 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 DISC1Q9NRI5 854 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 MTMR10Q9NXD2 777 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 KIF3AQ9Y496 699 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 MAFBQ9Y5Q3 323 aaPredicted RBP23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 IGSF9BQ9UPX0 1349 aa23.31■■□□□ 1.32
CCDC88C-210ENST00000555995 M0QZ92 97 aa23.3■■□□□ 1.32
CCDC88C-210ENST00000555995 TBX3O15119 743 aa23.3■■□□□ 1.32
CCDC88C-210ENST00000555995 EDIL3O43854 480 aa23.3■■□□□ 1.32
CCDC88C-210ENST00000555995 KRT40Q6A162 431 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms