RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 MSRB2Q9Y3D2 182 aa6.48□□□□□ -1.37
SCFD1-217ENST00000555953 CCDC9Q9Y3X0 531 aaKnown RBP6.48□□□□□ -1.37
SCFD1-217ENST00000555953 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.47□□□□□ -1.37
SCFD1-217ENST00000555953 FAM90A27PA6NNH2 459 aa6.47□□□□□ -1.37
SCFD1-217ENST00000555953 AMHP03971 560 aa6.47□□□□□ -1.37
SCFD1-217ENST00000555953 GDF5P43026 501 aa6.47□□□□□ -1.37
SCFD1-217ENST00000555953 PAK1Q13153 545 aa6.47□□□□□ -1.37
SCFD1-217ENST00000555953 USP10Q14694 798 aaKnown RBP6.47□□□□□ -1.37
SCFD1-217ENST00000555953 DPH6Q7L8W6 267 aa6.47□□□□□ -1.37
SCFD1-217ENST00000555953 SRPK3Q9UPE1 567 aa6.47□□□□□ -1.37
SCFD1-217ENST00000555953 SLPIP03973 132 aa6.46□□□□□ -1.38
SCFD1-217ENST00000555953 PTPN1P18031 435 aaKnown RBP6.46□□□□□ -1.38
SCFD1-217ENST00000555953 ACVRL1P37023 503 aa6.46□□□□□ -1.38
SCFD1-217ENST00000555953 FOXB2Q5VYV0 432 aa6.46□□□□□ -1.38
SCFD1-217ENST00000555953 BTBD8Q5XKL5 378 aa6.46□□□□□ -1.38
SCFD1-217ENST00000555953 ARHGAP36Q6ZRI8 547 aa6.46□□□□□ -1.38
SCFD1-217ENST00000555953 NEIL1Q96FI4 390 aaPredicted RBP6.46□□□□□ -1.38
SCFD1-217ENST00000555953 SEMA4AQ9H3S1 761 aa6.46□□□□□ -1.38
SCFD1-217ENST00000555953 TESMINQ9Y4I5 508 aa6.46□□□□□ -1.38
SCFD1-217ENST00000555953 ESYT3A0FGR9 886 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 MAN2B1O00754 1011 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 AQP7O14520 342 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 WNT9AO14904 365 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 AMY2AP04746 511 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 AMY2BP19961 511 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 POLD1P28340 1107 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 TOP3AQ13472 1001 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-217ENST00000555953 GPR19Q15760 415 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 MAMDC2Q7Z304 686 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-217ENST00000555953 MTDHQ86UE4 582 aaKnown RBP6.45□□□□□ -1.38
SCFD1-217ENST00000555953 SCUBE1Q8IWY4 988 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 ZFPM1Q8IX07 1006 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 GIMAP8Q8ND71 665 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-217ENST00000555953 PCDH19Q8TAB3 1148 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 CARD11Q9BXL7 1154 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 IGSF5Q9NSI5 407 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 RIC8BQ9NVN3 520 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 ZFR2Q9UPR6 939 aaKnown RBP6.45□□□□□ -1.38
SCFD1-217ENST00000555953 PCDHA8Q9Y5H6 950 aa6.45□□□□□ -1.38
SCFD1-217ENST00000555953 PDPK1O15530 556 aa6.44□□□□□ -1.38
SCFD1-217ENST00000555953 C6orf222P0C671 652 aaPredicted RBP6.44□□□□□ -1.38
SCFD1-217ENST00000555953 PDE6AP16499 860 aa6.44□□□□□ -1.38
SCFD1-217ENST00000555953 FAM209AQ5JX71 171 aa6.44□□□□□ -1.38
SCFD1-217ENST00000555953 TAX1BP1Q86VP1 789 aa6.44□□□□□ -1.38
SCFD1-217ENST00000555953 PTRH1Q86Y79 214 aaKnown RBP6.44□□□□□ -1.38
SCFD1-217ENST00000555953 NLGN4XQ8N0W4 816 aa6.44□□□□□ -1.38
SCFD1-217ENST00000555953 PTPRN2Q92932 1015 aa6.44□□□□□ -1.38
SCFD1-217ENST00000555953 FBXW5Q969U6 566 aa6.44□□□□□ -1.38
SCFD1-217ENST00000555953 PFDN2Q9UHV9 154 aa6.44□□□□□ -1.38
SCFD1-217ENST00000555953 CBLCQ9ULV8 474 aa6.44□□□□□ -1.38
SCFD1-217ENST00000555953 TRBV23-1A0A0A0MS06 115 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 ARVCFO00192 962 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 CYR61O00622 381 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 SUV39H1O43463 412 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 CUTAO60888 179 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 FZD7O75084 574 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 STK10O94804 968 aaKnown RBP6.43□□□□□ -1.38
SCFD1-217ENST00000555953 PYGMP11217 842 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 RASGRF1Q13972 1273 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 RNF151Q2KHN1 245 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 HS1BP3Q53T59 392 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 FIGNQ5HY92 759 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 OSTM1Q86WC4 334 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 CKAP2LQ8IYA6 745 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 CDC6Q99741 560 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 CATSPERZQ9NTU4 200 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 ARHGAP28Q9P2N2 729 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 ATP23Q9Y6H3 246 aa6.43□□□□□ -1.38
SCFD1-217ENST00000555953 DIAPH1O60610 1272 aaKnown RBP6.42□□□□□ -1.38
SCFD1-217ENST00000555953 KRT15P19012 456 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 RBM25P49756 843 aaKnown RBP6.42□□□□□ -1.38
SCFD1-217ENST00000555953 HMGA2P52926 109 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 RRADP55042 308 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 JAM2P57087 298 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 RAC3P60763 192 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 SUMO1P63165 101 aaKnown RBP6.42□□□□□ -1.38
SCFD1-217ENST00000555953 GUCY1A3Q02108 690 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 SSRP1Q08945 709 aaKnown RBP6.42□□□□□ -1.38
SCFD1-217ENST00000555953 NOLC1Q14978 699 aaKnown RBP eCLIP6.42□□□□□ -1.38
SCFD1-217ENST00000555953 ZNF568Q3ZCX4 644 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 MTERF2Q49AM1 385 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 DPP8Q6V1X1 898 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-217ENST00000555953 FUKQ8N0W3 1084 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 ZBTB38Q8NAP3 1195 aaPredicted RBP6.42□□□□□ -1.38
SCFD1-217ENST00000555953 EXOC2Q96KP1 924 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 ADOQ96SZ5 270 aa6.42□□□□□ -1.38
SCFD1-217ENST00000555953 CCDC85CA6NKD9 419 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 ZNF561-AS1K7EIQ3 104 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 U2SURPO15042 1029 aaKnown RBP6.41□□□□□ -1.38
SCFD1-217ENST00000555953 C4BPAP04003 597 aaKnown RBP6.41□□□□□ -1.38
SCFD1-217ENST00000555953 SRGAP2CP0DJJ0 459 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 PTGS1P23219 599 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 ETV4P43268 484 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 IL13RA1P78552 427 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 PRKD1Q15139 912 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-217ENST00000555953 WDR72Q3MJ13 1102 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 C16orf59Q7L2K0 433 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 DPYSL5Q9BPU6 564 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 MRIQ9BWK5 157 aa6.41□□□□□ -1.38
SCFD1-217ENST00000555953 BTBD7Q9P203 1132 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms