RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 MMS19Q96T76 1030 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 APOBEC2Q9Y235 224 aaKnown RBP18.86■□□□□ 0.61
SYNE3-204ENST00000555759 FHOD1Q9Y613 1164 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 CUL4BQ13620 913 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 KRT39Q6A163 491 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 SESTD1Q86VW0 696 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 DEPTORQ8TB45 409 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 UIMC1Q96RL1 719 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 LRRC1Q9BTT6 524 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 FAM102BQ5T8I3 360 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 OSBP2Q969R2 916 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 SEC16BQ96JE7 1060 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 ARFIP2P53365 341 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 KLHL38Q2WGJ6 581 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 UNC13DQ70J99 1090 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 CCDC127Q96BQ5 260 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 RBM17Q96I25 401 aaKnown RBP18.85■□□□□ 0.61
SYNE3-204ENST00000555759 NCOA3Q9Y6Q9 1424 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 PSMD7P51665 324 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 TSGA10IPQ3SY00 556 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 SGSM3Q96HU1 749 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 AIFM3Q96NN9 605 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 TEKT3Q9BXF9 490 aa18.85■□□□□ 0.61
SYNE3-204ENST00000555759 DCAF8L1A6NGE4 600 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 MAN1A2O60476 641 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 TMPRSS15P98073 1019 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 CATSPER1Q8NEC5 780 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 TMEM206Q9H813 350 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 PPP1R12AO14974 1030 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 WDR46O15213 610 aaKnown RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 GGPS1O95749 300 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 RCAN1P53805 252 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 SH3GLB2Q9NR46 395 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 COPEO14579 308 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 UFL1O94874 794 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 PDE8BO95263 885 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 MYCLP12524 364 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 RNF207Q6ZRF8 634 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 HDAC11Q96DB2 347 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 MBD5Q9P267 1494 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 FOXP2O15409 715 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 KCNQ3O43525 872 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 CEBPAP49715 358 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 TRIP13Q15645 432 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 PCGF5Q86SE9 256 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 SAYSD1Q9NPB0 183 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 TNNC2P02585 160 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 ZFXP17010 805 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 TTLL12Q14166 644 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 MCF2L2Q86YR7 1114 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 TAB3Q8N5C8 712 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 FAM161BQ96MY7 647 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 SENP1Q9P0U3 644 aa18.84■□□□□ 0.61
SYNE3-204ENST00000555759 LIMA1Q9UHB6 759 aaKnown RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 USP15Q9Y4E8 981 aaPredicted RBP18.84■□□□□ 0.61
SYNE3-204ENST00000555759 LRRN2O75325 713 aa18.83■□□□□ 0.61
SYNE3-204ENST00000555759 DLATP10515 647 aaKnown RBP18.83■□□□□ 0.61
SYNE3-204ENST00000555759 DACT3Q96B18 629 aaPredicted RBP18.83■□□□□ 0.61
SYNE3-204ENST00000555759 CYFIP2Q96F07 1278 aa18.83■□□□□ 0.61
SYNE3-204ENST00000555759 GNGT2O14610 69 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 STAT2P52630 851 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 BASP1P80723 227 aaKnown RBP18.83■□□□□ 0.6
SYNE3-204ENST00000555759 GFPT1Q06210 699 aaPredicted RBP18.83■□□□□ 0.6
SYNE3-204ENST00000555759 FUT8Q9BYC5 575 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 ZNF277Q9NRM2 450 aaPredicted RBP18.83■□□□□ 0.6
SYNE3-204ENST00000555759 DDIT3P35638 169 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 PRCPP42785 496 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 ARL4CP56559 192 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 DMP1Q13316 513 aaPredicted RBP18.83■□□□□ 0.6
SYNE3-204ENST00000555759 ZSWIM5Q9P217 1185 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 GGA1Q9UJY5 639 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 RTCBQ9Y3I0 505 aaKnown RBP18.83■□□□□ 0.6
SYNE3-204ENST00000555759 KRT10P13645 584 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 MTF1Q14872 753 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 BBS9Q3SYG4 887 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 ASPRV1Q53RT3 343 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 RGS9BPQ6ZS82 235 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 RAPH1Q70E73 1250 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 ACCSQ96QU6 501 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 DDX47Q9H0S4 455 aaKnown RBP18.83■□□□□ 0.6
SYNE3-204ENST00000555759 TBX22Q9Y458 520 aa18.83■□□□□ 0.6
SYNE3-204ENST00000555759 PVALEFA0A1B0GWK0 134 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 PSMD14O00487 310 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 SASH1O94885 1247 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 SLC20A2Q08357 652 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 TBCKQ8TEA7 893 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 DONSONQ9NYP3 566 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 ATP10DQ9P241 1426 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 CCDC22O60826 627 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 PABPC4Q13310 644 aaKnown RBP eCLIP18.82■□□□□ 0.6
SYNE3-204ENST00000555759 LRRC31Q6UY01 552 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 RAB44Q7Z6P3 723 aaPredicted RBP18.82■□□□□ 0.6
SYNE3-204ENST00000555759 DPF2Q92785 391 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 XPO6Q96QU8 1125 aaKnown RBP18.82■□□□□ 0.6
SYNE3-204ENST00000555759 UBE2TQ9NPD8 197 aaPredicted RBP18.82■□□□□ 0.6
SYNE3-204ENST00000555759 LCMT1Q9UIC8 334 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 TRAF3IP3Q9Y228 551 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 ATP7BP35670 1465 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 CFLARO15519 480 aa18.82■□□□□ 0.6
SYNE3-204ENST00000555759 PIK3CAP42336 1068 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms