RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 USP38Q8NB14 1042 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 MYCBPAPQ8TBZ2 947 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 HAS1Q92839 578 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 ATP6V1G3Q96LB4 118 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 CCT8L2Q96SF2 557 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 KCNK17Q96T54 332 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 EYA3Q99504 573 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.96□□□□□ -1.46
LIMA1-212ENST00000552491 GANQ9H2C0 597 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 SRP68Q9UHB9 627 aaKnown RBP5.96□□□□□ -1.46
LIMA1-212ENST00000552491 PLAAQ9Y263 795 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 ZNF652Q9Y2D9 606 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 PCDHA2Q9Y5H9 948 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 COL4A3BPQ9Y5P4 624 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 NFS1Q9Y697 457 aa5.96□□□□□ -1.46
LIMA1-212ENST00000552491 ATAD5Q96QE3 1844 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 COL5A3P25940 1745 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 BACH1O14867 736 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 LDHBP07195 334 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 HOXA7P31268 230 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 HSPA9P38646 679 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 MDH1P40925 334 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 RAPGEF1Q13905 1077 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 UBE2SQ16763 222 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 CCDC40Q4G0X9 1142 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 CEP85LQ5SZL2 805 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 SOGA3Q5TF21 947 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 B4GALNT4Q76KP1 1039 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 NLRP14Q86W24 1093 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 SPATS2Q86XZ4 545 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 TRIM59Q8IWR1 403 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 CEP89Q96ST8 783 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 LZTS2Q9BRK4 669 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 TMBIM4Q9HC24 238 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 COL16A1Q07092 1604 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 ATXN2Q99700 1313 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 LOC102724159A0A0B4J2E5 919 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 DCDC2CA8MYV0 355 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 BHMG1C9JSJ3 638 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 E9PMD0 336 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 KCNK3O14649 394 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 PPP1R11O60927 126 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 FSBPO95073 299 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 TMOD1P28289 359 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 HPDP32754 393 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 HSD17B3P37058 310 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 PPP4CP60510 307 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 FKBP3Q00688 224 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 PTK2Q05397 1052 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 ORC2Q13416 577 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 NFIXQ14938 502 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 PWP2Q15269 919 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 DDB1Q16531 1140 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 QPCTQ16769 361 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 FOXR2Q6PJQ5 311 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 C6orf89Q6UWU4 347 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 PTF1AQ7RTS3 328 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 ZNF571Q7Z3V5 609 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 MAATS1Q7Z4T9 603 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 IRF2BP2Q7Z5L9 587 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 AMIGO3Q86WK7 504 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 OTUD6BQ8N6M0 293 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 C1orf131Q8NDD1 294 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 NEDD1Q8NHV4 660 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 SCFD2Q8WU76 684 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 SCFD1Q8WVM8 642 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 SYN2Q92777 582 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 CDK5RAP3Q96JB5 506 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 PAGR1Q9BTK6 254 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 AP1M1Q9BXS5 423 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 RTFDC1Q9BY42 306 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 NUCKS1Q9H1E3 243 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 KCTD10Q9H3F6 313 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 RIOX1Q9H6W3 641 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 RIC8AQ9NPQ8 531 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 CNOT8Q9UFF9 292 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 ARFGEF1Q9Y6D6 1849 aa5.95□□□□□ -1.46
LIMA1-212ENST00000552491 COL14A1Q05707 1796 aaKnown RBP5.95□□□□□ -1.46
LIMA1-212ENST00000552491 ESYT2A0FGR8 921 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 SSBP05455 408 aaKnown RBP eCLIP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 PDHBP11177 359 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 ITGA4P13612 1032 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 SLC9A1P19634 815 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 TNNI2P48788 182 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 CASP5P51878 434 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 MNAT1P51948 309 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 EIF6P56537 245 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 ZNF844Q08AG5 666 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 KLHL30Q0D2K2 578 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 IFT88Q13099 833 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 PDIA5Q14554 519 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 FAM26FQ5R3K3 315 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 C16orf86Q6ZW13 317 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 LRRC57Q8N9N7 239 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 WHAMMQ8TF30 809 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 NLRP3Q96P20 1036 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 TSG101Q99816 390 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 DDX47Q9H0S4 455 aaKnown RBP5.94□□□□□ -1.46
LIMA1-212ENST00000552491 ISCUQ9H1K1 167 aa5.94□□□□□ -1.46
LIMA1-212ENST00000552491 TAF1DQ9H5J8 278 aaPredicted RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms