RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PSAPP07602 524 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 SLFN14P0C7P3 912 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 SUPT20HL2P0C7V6 817 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 HSPA1AP0DMV8 641 aaKnown RBP10.74□□□□□ -0.69
LIMA1-211ENST00000552338 HSPA1BP0DMV9 641 aaKnown RBP10.74□□□□□ -0.69
LIMA1-211ENST00000552338 LIG1P18858 919 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 CDC25AP30304 524 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 SYKP43405 635 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 QARSP47897 775 aaKnown RBP10.74□□□□□ -0.69
LIMA1-211ENST00000552338 PSMC5P62195 406 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 MDM2Q00987 491 aaPredicted RBP10.74□□□□□ -0.69
LIMA1-211ENST00000552338 ECM1Q16610 540 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 SPECC1Q5M775 1068 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 PRAMEF19Q5SWL8 479 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 KANK3Q6NY19 840 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 MIS18BP1Q6P0N0 1132 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 RBM43Q6ZSC3 357 aaKnown RBP10.74□□□□□ -0.69
LIMA1-211ENST00000552338 CTU1Q7Z7A3 348 aaKnown RBP10.74□□□□□ -0.69
LIMA1-211ENST00000552338 FSIP1Q8NA03 581 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 IQUBQ8NA54 791 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 SNX29Q8TEQ0 813 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 CALML4Q96GE6 196 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 PCYT2Q99447 389 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 ZSWIM4Q9H7M6 989 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 MLXIPQ9HAP2 919 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 BLOC1S4Q9NUP1 217 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 DDX19AQ9NUU7 478 aaKnown RBP10.74□□□□□ -0.69
LIMA1-211ENST00000552338 KBTBD4Q9NVX7 518 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 TCEAL9Q9UHQ7 104 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 DBR1Q9UK59 544 aaKnown RBP10.74□□□□□ -0.69
LIMA1-211ENST00000552338 PPME1Q9Y570 386 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 PTCH2Q9Y6C5 1203 aa10.74□□□□□ -0.69
LIMA1-211ENST00000552338 PP2D1A8MPX8 630 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 POLR2DO15514 142 aaKnown RBP10.73□□□□□ -0.69
LIMA1-211ENST00000552338 ACTN4O43707 911 aaKnown RBP10.73□□□□□ -0.69
LIMA1-211ENST00000552338 KPNA6O60684 536 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 NR1I2O75469 434 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 TMEM63BQ5T3F8 832 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 NCAPH2Q6IBW4 605 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 PDXDC2PQ6P474 469 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 FBXO46Q6PJ61 603 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-211ENST00000552338 KRBA2Q6ZNG9 492 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 KLHDC9Q8NEP7 349 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 SPATA20Q8TB22 786 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 LRRC15Q8TF66 581 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 COPS5Q92905 334 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 NACC1Q96RE7 527 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 NIFKQ9BYG3 293 aaKnown RBP10.73□□□□□ -0.69
LIMA1-211ENST00000552338 TNMDQ9H2S6 317 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 ANKEF1Q9NU02 776 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 TSKSQ9UJT2 592 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 ZHX1Q9UKY1 873 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-211ENST00000552338 MYH11P35749 1972 aa10.73□□□□□ -0.69
LIMA1-211ENST00000552338 ZNF862O60290 1169 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 TRAK2O60296 914 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 ADAMTS4O75173 837 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 EYA4O95677 639 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 MMP3P08254 477 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 PRKAR2AP13861 404 aaKnown RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 ELNP15502 786 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 PLCG1P19174 1290 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 ATP4AP20648 1035 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 TCF7P36402 384 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 CCT6AP40227 531 aaKnown RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 STAT5BP51692 787 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 TRIM32Q13049 653 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 KARSQ15046 597 aaKnown RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 LONRF3Q496Y0 759 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 NT5DC1Q5TFE4 455 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 RRAGBQ5VZM2 374 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 LHX8Q68G74 356 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 CCSAPQ6IQ19 270 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 TLK2Q86UE8 772 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 CCDC60Q8IWA6 550 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 SYT2Q8N9I0 419 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 ATP6V0A1Q93050 837 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 ARMC5Q96C12 935 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 DYDC2Q96IM9 177 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 SPATA33Q96N06 139 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 CEP89Q96ST8 783 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 MTRQ99707 1265 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 LXNQ9BS40 222 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 C16orf70Q9BSU1 422 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 SMARCAD1Q9H4L7 1026 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 HMX1Q9NP08 348 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 PAK6Q9NQU5 681 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 DACT1Q9NYF0 836 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 RGL1Q9NZL6 768 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 KCND2Q9NZV8 630 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 WRAP73Q9P2S5 460 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-211ENST00000552338 TELO2Q9Y4R8 837 aa10.72□□□□□ -0.69
LIMA1-211ENST00000552338 POTEB3A0JP26 581 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 DDX39AO00148 427 aaKnown RBP10.71□□□□□ -0.69
LIMA1-211ENST00000552338 HAS3O00219 553 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 INHAP05111 366 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 CCND3P30281 292 aaPredicted RBP10.71□□□□□ -0.69
LIMA1-211ENST00000552338 SARSP49591 514 aaKnown RBP10.71□□□□□ -0.69
LIMA1-211ENST00000552338 CPT1AP50416 773 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 LBX1P52954 281 aa10.71□□□□□ -0.69
LIMA1-211ENST00000552338 SLC12A3P55017 1021 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms