RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-222	ENST00000551425	RASGRP4	Q8TDF6	673 aa		13.86	□□□□□ -0.19
PTCH1-222	ENST00000551425	FTHL17	Q9BXU8	183 aa		13.86	□□□□□ -0.19
PTCH1-222	ENST00000551425	AGO3	Q9H9G7	860 aa	Known RBP	13.86	□□□□□ -0.19
PTCH1-222	ENST00000551425	FSCN2	O14926	492 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	DHX16	O60231	1041 aa	Known RBP	13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	HOXB8	P17481	243 aa	Predicted RBP	13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	HOXA13	P31271	388 aa	Predicted RBP	13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	GNPTAB	Q3T906	1256 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	CYFIP1	Q7L576	1253 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	ESR2	Q92731	530 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	RMDN1	Q96DB5	314 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	INPP4A	Q96PE3	977 aa	Predicted RBP	13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	VAT1L	Q9HCJ6	419 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	HELLS	Q9NRZ9	838 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	PCDHB12	Q9Y5F1	795 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	CDY2A	Q9Y6F7	541 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	SQOR	Q9Y6N5	450 aa		13.85	□□□□□ -0.19
PTCH1-222	ENST00000551425	MBLAC1	A4D2B0	266 aa	Predicted RBP	13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	SPATA31C2	B4DYI2	1134 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	PPFIA3	O75145	1194 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	STAM2	O75886	525 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	RPLP2	P05387	115 aa	Known RBP	13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	CD52	P31358	61 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	TEC	P42680	631 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	NT5C2	P49902	561 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	ERVFC1	P60507	584 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	HAND2	P61296	217 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	CCDC178	Q5BJE1	867 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	DGLUCY	Q7Z3D6	616 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	ZFP91	Q96JP5	570 aa	Predicted RBP	13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	ZKSCAN3	Q9BRR0	538 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	RNF41	Q9H4P4	317 aa	Predicted RBP	13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	KAT14	Q9H8E8	782 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	AAAS	Q9NRG9	546 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	KIAA1671	Q9BY89	1806 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	EPG5	Q9HCE0	2579 aa		13.84	□□□□□ -0.19
PTCH1-222	ENST00000551425	KMT2B	Q9UMN6	2715 aa	Predicted RBP	13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	CACNA1B	Q00975	2339 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	PPP1R11	O60927	126 aa	Predicted RBP	13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	FGF18	O76093	207 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	PARP1	P09874	1014 aa	Known RBP	13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	SCG2	P13521	617 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	SP100	P23497	879 aa	Predicted RBP	13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	MRPS6	P82932	125 aa	Known RBP	13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	SEMA3F	Q13275	785 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	UTP14C	Q5TAP6	766 aa	Known RBP	13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	TBC1D10C	Q8IV04	446 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	DNAJB3	Q8WWF6	145 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	MTMR8	Q96EF0	704 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	MFSD1	Q9H3U5	465 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	TUBE1	Q9UJT0	475 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	PCDHA1	Q9Y5I3	950 aa		13.83	□□□□□ -0.2
PTCH1-222	ENST00000551425	C2CD4D	B7Z1M9	353 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	FIBP	O43427	364 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	KRT37	O76014	449 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	POLR2M	P0CAP2	368 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	GATM	P50440	423 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	MRPS9	P82933	396 aa	Known RBP	13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	PPFIA1	Q13136	1202 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	GRIK4	Q16099	956 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	MARCH8	Q5T0T0	291 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	IQCA1	Q86XH1	822 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	NECTIN4	Q96NY8	510 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	SENP7	Q9BQF6	1050 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	SEMA4A	Q9H3S1	761 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	SMOC2	Q9H3U7	446 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	TSHZ2	Q9NRE2	1034 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	LZTS1	Q9Y250	596 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	TELO2	Q9Y4R8	837 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	NEDD4	P46934	1319 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	FRMPD4	Q14CM0	1322 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	NCOR2	Q9Y618	2525 aa		13.82	□□□□□ -0.2
PTCH1-222	ENST00000551425	PLXNA4	Q9HCM2	1894 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	ZBTB5	O15062	677 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	MCMDC2	Q4G0Z9	681 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	IER5	Q5VY09	327 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	CWF19L1	Q69YN2	538 aa	Known RBP	13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	FCHSD1	Q86WN1	690 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	APOL5	Q9BWW9	433 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	POMK	Q9H5K3	350 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	TMEM260	Q9NX78	707 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	LRFN2	Q9ULH4	789 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	PADI3	Q9ULW8	664 aa		13.81	□□□□□ -0.2
PTCH1-222	ENST00000551425	TRIM6-TRIM34	B2RNG4	842 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	AOC1	P19801	751 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	MX1	P20591	662 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	SARS	P49591	514 aa	Known RBP	13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	ITIH3	Q06033	890 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	TRAF1	Q13077	416 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	PUM1	Q14671	1186 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	ANGPT1	Q15389	498 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	TPRN	Q4KMQ1	711 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	SPOUT1	Q5T280	376 aa	Known RBP	13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	CES5A	Q6NT32	575 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	CCDC105	Q8IYK2	499 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	THNSL1	Q8IYQ7	743 aa		13.8	□□□□□ -0.2
PTCH1-222	ENST00000551425	ZDHHC14	Q8IZN3	488 aa		13.8	□□□□□ -0.2

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