RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 QRICH1Q2TAL8 776 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 C11orf91Q3C1V1 193 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 LDLRAD1Q5T700 205 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 ADALQ6DHV7 355 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 TTBK2Q6IQ55 1244 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 TMEM214Q6NUQ4 689 aaKnown RBP9.6□□□□□ -0.87
VPS29-203ENST00000546588 KCTD1Q719H9 257 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 KRT26Q7Z3Y9 468 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 ETFBKMTQ8IXQ9 262 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 ZNF280CQ8ND82 737 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 BICD2Q8TD16 824 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 ZDHHC1Q8WTX9 485 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 CHURC1Q8WUH1 139 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 CRYGNQ8WXF5 182 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 CDCA5Q96FF9 252 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 SPATA32Q96LK8 384 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 GLIS2Q9BZE0 524 aaPredicted RBP9.6□□□□□ -0.87
VPS29-203ENST00000546588 PHACTR1Q9C0D0 580 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 RIC8AQ9NPQ8 531 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 RNF19AQ9NV58 838 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 PCDHA6Q9UN73 950 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 KCNH4Q9UQ05 1017 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 PCDHA8Q9Y5H6 950 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 KIAA1217Q5T5P2 1943 aa9.6□□□□□ -0.87
VPS29-203ENST00000546588 PLXNA1Q9UIW2 1896 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 ZNFX1Q9P2E3 1918 aaKnown RBP9.59□□□□□ -0.87
VPS29-203ENST00000546588 ADM5C9JUS6 153 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 ATP2A1O14983 1001 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 OAZ1P54368 228 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 PPATQ06203 517 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 PSMD2Q13200 908 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 VGLL4Q14135 290 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 MRPL58Q14197 206 aaKnown RBP9.59□□□□□ -0.87
VPS29-203ENST00000546588 CCDC96Q2M329 555 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 EARS2Q5JPH6 523 aaKnown RBP9.59□□□□□ -0.87
VPS29-203ENST00000546588 AXDND1Q5T1B0 1012 aaPredicted RBP9.59□□□□□ -0.87
VPS29-203ENST00000546588 LBX2Q6XYB7 198 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 RBM43Q6ZSC3 357 aaKnown RBP9.59□□□□□ -0.87
VPS29-203ENST00000546588 KRT25Q7Z3Z0 450 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 ANKRD13AQ8IZ07 590 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 ZNF837Q96EG3 531 aaPredicted RBP9.59□□□□□ -0.87
VPS29-203ENST00000546588 IFT43Q96FT9 208 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 PGBD1Q96JS3 809 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 FAM129BQ96TA1 746 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 AMNQ9BXJ7 453 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 UBA5Q9GZZ9 404 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 CPVLQ9H3G5 476 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 C6orf50Q9HD87 102 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 VTI1BQ9UEU0 232 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 PRR12Q9ULL5 1215 aa9.59□□□□□ -0.87
VPS29-203ENST00000546588 SCAF8Q9UPN6 1271 aaKnown RBP9.59□□□□□ -0.87
VPS29-203ENST00000546588 PLXNB2O15031 1838 aa9.59□□□□□ -0.88
VPS29-203ENST00000546588 ZNF536O15090 1300 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 FRMPD4Q14CM0 1322 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 hCG_1642624A0A1W2PR95 340 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 TMEM232C9JQI7 657 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 LAD1O00515 517 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 OPLAHO14841 1288 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 FIBPO43427 364 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 VCAM1P19320 739 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 IREB2P48200 963 aaKnown RBP9.58□□□□□ -0.88
VPS29-203ENST00000546588 NAPAP54920 295 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 NLRP5P59047 1200 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 ATP2C1P98194 919 aaPredicted RBP9.58□□□□□ -0.88
VPS29-203ENST00000546588 AP3B2Q13367 1082 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 ARL6IP4Q66PJ3 421 aaKnown RBP9.58□□□□□ -0.88
VPS29-203ENST00000546588 MOXD1Q6UVY6 613 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 HEATR3Q7Z4Q2 680 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 LDHDQ86WU2 507 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 ELOA2Q8IYF1 753 aaPredicted RBP9.58□□□□□ -0.88
VPS29-203ENST00000546588 PRPF38AQ8NAV1 312 aaKnown RBP9.58□□□□□ -0.88
VPS29-203ENST00000546588 TTC16Q8NEE8 873 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 REPS2Q8NFH8 660 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 ENGASEQ8NFI3 743 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 SLC38A10Q9HBR0 1119 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 MAP3K20Q9NYL2 800 aaKnown RBP9.58□□□□□ -0.88
VPS29-203ENST00000546588 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.58□□□□□ -0.88
VPS29-203ENST00000546588 ISY1Q9ULR0 285 aaKnown RBP9.58□□□□□ -0.88
VPS29-203ENST00000546588 CEP131Q9UPN4 1083 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 HPSEQ9Y251 543 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 HRH3Q9Y5N1 445 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 CLIC4Q9Y696 253 aa9.58□□□□□ -0.88
VPS29-203ENST00000546588 A0A0G2JLL6 359 aaPredicted RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 SMCO2A6NFE2 343 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 CXCL11O14625 94 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 MEIS2O14770 477 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 SCAMP3O14828 347 aaKnown RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 ADAMTS3O15072 1205 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 SPTLC2O15270 562 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 SORBS3O60504 671 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 GADD45BO75293 160 aaPredicted RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 ITGB2P05107 769 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 ICAM1P05362 532 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 MZF1P28698 734 aaPredicted RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 HOXA7P31268 230 aaPredicted RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 NF2P35240 595 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 PRPHP41219 470 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 ZNF445P59923 1031 aa9.57□□□□□ -0.88
VPS29-203ENST00000546588 SF3A1Q15459 793 aaKnown RBP9.57□□□□□ -0.88
VPS29-203ENST00000546588 FAM83BQ5T0W9 1011 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms