RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 XRRA1Q6P2D8 792 aa20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 TSHZ1Q6ZSZ6 1077 aa20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 RTN4RL1Q86UN2 441 aaPredicted RBP20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 GIMAP8Q8ND71 665 aaPredicted RBP20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 MSLNLQ96KJ4 702 aa20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 POP1Q99575 1024 aaKnown RBP20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 PLVAPQ9BX97 442 aa20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 AGO3Q9H9G7 860 aaKnown RBP20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 CD207Q9UJ71 328 aa20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 PLAGL2Q9UPG8 496 aa20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 CDY2AQ9Y6F7 541 aa20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 MRPL42Q9Y6G3 142 aaKnown RBP20.52■□□□□ 0.88
CLSTN3-214ENST00000542663 WDR81Q562E7 1941 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 ERICH2A1L162 156 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 E7EWF7 191 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 MARK3P27448 753 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 ADGRD2Q7Z7M1 963 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 NLRX1Q86UT6 975 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 IGDCC4Q8TDY8 1250 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 P2RX5Q93086 422 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 GPRASP2Q96D09 838 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 ZBTB10Q96DT7 871 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 SPZ1Q9BXG8 430 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 USP34Q70CQ2 3546 aa20.51■□□□□ 0.87
CLSTN3-214ENST00000542663 STXBP3O00186 592 aa20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 ITGB1P05556 798 aa20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 GSPT1P15170 499 aaKnown RBP20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 ITGB5P18084 799 aa20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 CD52P31358 61 aa20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 MRPS6P82932 125 aaKnown RBP20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 RSPH3Q86UC2 560 aa20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 SEPT1Q8WYJ6 367 aa20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 CUL5Q93034 780 aa20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 ERAP1Q9NZ08 941 aa20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 CLEC1BQ9P126 229 aa20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 U3KPZ7 1027 aaPredicted RBP20.5■□□□□ 0.87
CLSTN3-214ENST00000542663 EYA4O95677 639 aa20.49■□□□□ 0.87
CLSTN3-214ENST00000542663 CATIPQ7Z7H3 387 aa20.49■□□□□ 0.87
CLSTN3-214ENST00000542663 NCOA7Q8NI08 942 aa20.49■□□□□ 0.87
CLSTN3-214ENST00000542663 SPPL3Q8TCT6 385 aa20.49■□□□□ 0.87
CLSTN3-214ENST00000542663 EDAQ92838 391 aa20.49■□□□□ 0.87
CLSTN3-214ENST00000542663 MFSD14AQ96MC6 490 aa20.49■□□□□ 0.87
CLSTN3-214ENST00000542663 MYL10Q9BUA6 226 aa20.49■□□□□ 0.87
CLSTN3-214ENST00000542663 NDUFV1P49821 464 aa20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 SART3Q15020 963 aaKnown RBP20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 RALYLQ86SE5 291 aaKnown RBP20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 MB21D2Q8IYB1 491 aaPredicted RBP20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 CMTR2Q8IYT2 770 aaKnown RBP20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 GLG1Q92896 1179 aa20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 RRP36Q96EU6 259 aaKnown RBP20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 PCYT2Q99447 389 aa20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 PHOX2BQ99453 314 aa20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 MAP3K14Q99558 947 aa20.48■□□□□ 0.87
CLSTN3-214ENST00000542663 MYH9P35579 1960 aaKnown RBP20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 GLP2RO95838 553 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 IGBP1P78318 339 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 NAALADL2Q58DX5 795 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 ZNF654Q8IZM8 581 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 EFHBQ8N7U6 833 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 KLHL23Q8NBE8 558 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 SMRP1Q8NCR6 262 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 CDHR1Q96JP9 859 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 FAM49AQ9H0Q0 323 aaPredicted RBP20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 SMARCAD1Q9H4L7 1026 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 LY9Q9HBG7 655 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 PKD2L1Q9P0L9 805 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 UBIAD1Q9Y5Z9 338 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 SQORQ9Y6N5 450 aa20.47■□□□□ 0.87
CLSTN3-214ENST00000542663 INSRRP14616 1297 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 PDE4AP27815 886 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 SMARCA1P28370 1054 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 GATMP50440 423 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 COASYQ13057 564 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 PAN2Q504Q3 1202 aaKnown RBP20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 TTC22Q5TAA0 569 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 BMP8AQ7Z5Y6 402 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 NPAS4Q8IUM7 802 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 PRSS33Q8NF86 280 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 PADI3Q9ULW8 664 aa20.46■□□□□ 0.87
CLSTN3-214ENST00000542663 LOC730098B7Z3J9 87 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 DDAH1O94760 285 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 PLEKHA8P1O95397 391 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 TMEM62Q0P6H9 643 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 MTMR1Q13613 665 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 UBE2SQ16763 222 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 IER5LQ5T953 404 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 CMTR1Q8N1G2 835 aaKnown RBP20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 SRBD1Q8N5C6 995 aaKnown RBP20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 CTCFLQ8NI51 663 aaPredicted RBP20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 TRAPPC12Q8WVT3 735 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 POF1BQ8WVV4 589 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 FTHL17Q9BXU8 183 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 SEC63Q9UGP8 760 aaKnown RBP20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 PCDHGC5Q9Y5F6 944 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 IGSF9BQ9UPX0 1349 aa20.45■□□□□ 0.86
CLSTN3-214ENST00000542663 RRN3P2A6NIE6 340 aa20.44■□□□□ 0.86
CLSTN3-214ENST00000542663 CHMLP26374 656 aa20.44■□□□□ 0.86
CLSTN3-214ENST00000542663 NRIP1P48552 1158 aa20.44■□□□□ 0.86
CLSTN3-214ENST00000542663 IER5Q5VY09 327 aa20.44■□□□□ 0.86
CLSTN3-214ENST00000542663 TRIM67Q6ZTA4 783 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms