RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, human

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-215	ENST00000540904	GNAT1	P11488	350 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	GCFC2	P16383	781 aa	Known RBP	10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	STAT5B	P51692	787 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	KRT76	Q01546	638 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	PPFIA1	Q13136	1202 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	PTK7	Q13308	1070 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	LRCH2	Q5VUJ6	765 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	PPP4R3A	Q6IN85	833 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	ZNF746	Q6NUN9	644 aa	Predicted RBP	10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	SWSAP1	Q6NVH7	229 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	MIS18BP1	Q6P0N0	1132 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	MOXD1	Q6UVY6	613 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	ABHD15	Q6UXT9	468 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	CCDC155	Q8N6L0	562 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	CAGE1	Q8TC20	777 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	LMBR1	Q8WVP7	490 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	SLC5A5	Q92911	643 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	WNT8B	Q93098	351 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	MBOAT7	Q96N66	472 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	RIT2	Q99578	217 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	TEKT3	Q9BXF9	490 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	TRPC6	Q9Y210	931 aa		10.44	□□□□□ -0.74
SNHG1-215	ENST00000540904	MYH7B	A7E2Y1	1941 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	NRCAM	Q92823	1304 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	LTBP2	Q14767	1821 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	IGKV6D-21	A0A0A0MT36	114 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	POTEB3	A0JP26	581 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	WDR64	B1ANS9	1081 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	PSMD10	O75832	226 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	PSAP	P07602	524 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	CKB	P12277	381 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	HOXC8	P31273	242 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	THPO	P40225	353 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	IGBP1	P78318	339 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	GNL2	Q13823	731 aa	Known RBP	10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	GRIK4	Q16099	956 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	FAM160B1	Q5W0V3	765 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	PDXDC2P	Q6P474	469 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	POTEB	Q6S5H4	581 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	C16orf59	Q7L2K0	433 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	PLPPR4	Q7Z2D5	763 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	TRMT1L	Q7Z2T5	733 aa	Known RBP	10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	DEFB128	Q7Z7B8	93 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	SERINC5	Q86VE9	423 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	CCDC60	Q8IWA6	550 aa	Predicted RBP	10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	CKAP2L	Q8IYA6	745 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	SMAP1	Q8IYB5	467 aa	Predicted RBP	10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	FBXO18	Q8NFZ0	1043 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	ETNPPL	Q8TBG4	499 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	RNPC3	Q96LT9	517 aa	Known RBP	10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	NAP1L4	Q99733	375 aa	Known RBP	10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	UNC45A	Q9H3U1	944 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	IL23A	Q9NPF7	189 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	ZNF302	Q9NR11	478 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	KIF3A	Q9Y496	699 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	PCDHA10	Q9Y5I2	948 aa		10.43	□□□□□ -0.74
SNHG1-215	ENST00000540904	MARCH6	O60337	910 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	INSRR	P14616	1297 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	SELP	P16109	830 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	ATP2B1	P20020	1258 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	GJB2	P29033	226 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	SLC26A2	P50443	739 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	FXR1	P51114	621 aa	Known RBP eCLIP	10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	ADAM17	P78536	824 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	PLCB4	Q15147	1175 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	TRIM71	Q2Q1W2	868 aa	Known RBP	10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	LRIT3	Q3SXY7	679 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	TMEM240	Q5SV17	173 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	PSRC1	Q6PGN9	363 aa	Predicted RBP	10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	ZNF365	Q70YC5	407 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	LRRC8D	Q7L1W4	858 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	OTOP2	Q7RTS6	562 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	RPUSD2	Q8IZ73	545 aa	Known RBP	10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	AFAP1L1	Q8TED9	768 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	TNPO1	Q92973	898 aa	Known RBP	10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.42	□□□□□ -0.74	7e-26	■□□□□ 10.9
SNHG1-215	ENST00000540904	FOXP1	Q9H334	677 aa	Predicted RBP	10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	DISC1	Q9NRI5	854 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	GABBR1	Q9UBS5	961 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	TUBE1	Q9UJT0	475 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	SMC3	Q9UQE7	1217 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	DOCK5	Q9H7D0	1870 aa		10.42	□□□□□ -0.74
SNHG1-215	ENST00000540904	RRN3P2	A6NIE6	340 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	SOX1	O00570	391 aa	Predicted RBP	10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	WNT7A	O00755	349 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	FGB	P02675	491 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	CTSH	P09668	335 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	SFN	P31947	248 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	RFC2	P35250	354 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	JAK3	P52333	1124 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	RBL2	Q08999	1139 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	MARCH8	Q5T0T0	291 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	ZNF618	Q5T7W0	954 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	RUFY4	Q6ZNE9	571 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	MIER3	Q7Z3K6	550 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	ATP8B4	Q8TF62	1192 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	TRAPPC12	Q8WVT3	735 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	ZBTB10	Q96DT7	871 aa		10.41	□□□□□ -0.74
SNHG1-215	ENST00000540904	LRCH3	Q96II8	777 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms