RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 SP4Q02446 784 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 PDXDC1Q6P996 788 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 NYAP2Q9P242 653 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 PLIN4Q96Q06 1357 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 TRIM49P0CI25 452 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 TRIM49CP0CI26 452 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 LRRC63Q05C16 580 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 LLGL1Q15334 1064 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 ZCWPW2Q504Y3 356 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 DEFB132Q7Z7B7 95 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 PCIF1Q9H4Z3 704 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 L1RE1Q9UN81 338 aa18.63■□□□□ 0.57
USP28-208ENST00000540438 KIAA0753Q2KHM9 967 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 SFMBT2Q5VUG0 894 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 HGSNATQ68CP4 663 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 KCTD10Q9H3F6 313 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 HDAC9Q9UKV0 1011 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 CEP350Q5VT06 3117 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 USO1O60763 962 aaKnown RBP18.62■□□□□ 0.57
USP28-208ENST00000540438 NOP2P46087 812 aaKnown RBP18.62■□□□□ 0.57
USP28-208ENST00000540438 STAT2P52630 851 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 KLHL30Q0D2K2 578 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 CCDC181Q5TID7 509 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 SPAG5Q96R06 1193 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 NT5C3AQ9H0P0 336 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 SH2D4AQ9H788 454 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 ADAM21Q9UKJ8 722 aa18.62■□□□□ 0.57
USP28-208ENST00000540438 PALMO75781 387 aa18.61■□□□□ 0.57
USP28-208ENST00000540438 TATDN1Q6P1N9 297 aa18.61■□□□□ 0.57
USP28-208ENST00000540438 SEPT11Q9NVA2 429 aaKnown RBP18.61■□□□□ 0.57
USP28-208ENST00000540438 SAMM50Q9Y512 469 aa18.61■□□□□ 0.57
USP28-208ENST00000540438 DLGAP5Q15398 846 aa18.61■□□□□ 0.57
USP28-208ENST00000540438 UTP14CQ5TAP6 766 aaKnown RBP18.61■□□□□ 0.57
USP28-208ENST00000540438 LRCH2Q5VUJ6 765 aa18.61■□□□□ 0.57
USP28-208ENST00000540438 CC2D2BQ6DHV5 1058 aa18.61■□□□□ 0.57
USP28-208ENST00000540438 ADAT2Q7Z6V5 191 aaKnown RBP18.61■□□□□ 0.57
USP28-208ENST00000540438 ZSWIM2Q8NEG5 633 aa18.61■□□□□ 0.57
USP28-208ENST00000540438 ASTN2O75129 1339 aaPredicted RBP18.61■□□□□ 0.57
USP28-208ENST00000540438 hCG_1984214I3L0E3 225 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 CETN3O15182 167 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 TACC1O75410 805 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 ZNF713Q8N859 430 aaPredicted RBP18.6■□□□□ 0.57
USP28-208ENST00000540438 DCAF4Q8WV16 495 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 SUGT1Q9Y2Z0 365 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 RABGAP1Q9Y3P9 1069 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 TBCAO75347 108 aaKnown RBP18.6■□□□□ 0.57
USP28-208ENST00000540438 USP14P54578 494 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 BRD3Q15059 726 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 HDXQ7Z353 690 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 CREG2Q8IUH2 290 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 IFT81Q8WYA0 676 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 IDI2Q9BXS1 227 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 BRWD3Q6RI45 1802 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 PTK2Q05397 1052 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 MAPK8IP2Q13387 824 aaPredicted RBP18.6■□□□□ 0.57
USP28-208ENST00000540438 IL31RAQ8NI17 732 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 OSBPL9Q96SU4 736 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 RBM12Q9NTZ6 932 aaKnown RBP18.6■□□□□ 0.57
USP28-208ENST00000540438 ZNF831Q5JPB2 1677 aa18.6■□□□□ 0.57
USP28-208ENST00000540438 A0A0U1RQG5 324 aaPredicted RBP18.59■□□□□ 0.57
USP28-208ENST00000540438 CCDC170Q8IYT3 715 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 MSANTD4Q8NCY6 345 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 ARMCX3Q9UH62 379 aaPredicted RBP18.59■□□□□ 0.57
USP28-208ENST00000540438 GCFC2P16383 781 aaKnown RBP18.59■□□□□ 0.57
USP28-208ENST00000540438 USP11P51784 963 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 ARHGAP44Q17R89 818 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 FOXR1Q6PIV2 292 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 TRIM59Q8IWR1 403 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 KLHL7Q8IXQ5 586 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 RETREG2Q8NC44 543 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 MKL1Q969V6 931 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 EHD4Q9H223 541 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 ZNF70Q9UC06 446 aaPredicted RBP18.59■□□□□ 0.57
USP28-208ENST00000540438 USP20Q9Y2K6 914 aa18.59■□□□□ 0.57
USP28-208ENST00000540438 NFIBO00712 420 aa18.58■□□□□ 0.57
USP28-208ENST00000540438 ERLIN1O75477 346 aa18.58■□□□□ 0.57
USP28-208ENST00000540438 GFPT2O94808 682 aa18.58■□□□□ 0.57
USP28-208ENST00000540438 FGFR1OPO95684 399 aaKnown RBP18.58■□□□□ 0.57
USP28-208ENST00000540438 INPP5BP32019 993 aa18.58■□□□□ 0.57
USP28-208ENST00000540438 HNRNPH2P55795 449 aaKnown RBP18.58■□□□□ 0.57
USP28-208ENST00000540438 MKRN4PQ13434 485 aaPredicted RBP18.58■□□□□ 0.57
USP28-208ENST00000540438 PRKG1Q13976 671 aa18.58■□□□□ 0.57
USP28-208ENST00000540438 SLC9C1Q4G0N8 1177 aa18.58■□□□□ 0.57
USP28-208ENST00000540438 PAPD7Q5XG87 772 aaKnown RBP18.58■□□□□ 0.57
USP28-208ENST00000540438 TMOD2Q9NZR1 351 aa18.58■□□□□ 0.57
USP28-208ENST00000540438 SNX12Q9UMY4 172 aa18.58■□□□□ 0.57
USP28-208ENST00000540438 DNAH12Q6ZR08 3092 aa18.58■□□□□ 0.57
USP28-208ENST00000540438 PEX10O60683 326 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 GAS7O60861 476 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 ABCB4P21439 1286 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 HAUS3Q68CZ6 603 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 SND1Q7KZF4 910 aaKnown RBP eCLIP18.58■□□□□ 0.56
USP28-208ENST00000540438 OGFOD1Q8N543 542 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 TLR10Q9BXR5 811 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 MYO1AQ9UBC5 1043 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 KDM3AQ9Y4C1 1321 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 SLITRK3O94933 977 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 FAM13AO94988 1023 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 SOX10P56693 466 aa18.58■□□□□ 0.56
USP28-208ENST00000540438 GRIPAP1Q4V328 841 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms