RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 AMY2BP19961 511 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 ATP2B1P20020 1258 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 CSF2RBP32927 897 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 DBPQ10586 325 aaPredicted RBP5.59□□□□□ -1.51
VPS13A-213ENST00000539950 GPR19Q15760 415 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 NBPF6Q5VWK0 638 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 BTBD8Q5XKL5 378 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 ARHGAP36Q6ZRI8 547 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 RALYLQ86SE5 291 aaKnown RBP5.59□□□□□ -1.51
VPS13A-213ENST00000539950 OSTM1Q86WC4 334 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 PTRH1Q86Y79 214 aaKnown RBP5.59□□□□□ -1.51
VPS13A-213ENST00000539950 AJUBAQ96IF1 538 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 NBPF4Q96M43 638 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 PTPN22Q9Y2R2 807 aa5.59□□□□□ -1.51
VPS13A-213ENST00000539950 ARVCFO00192 962 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 MAN2B1O00754 1011 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 SRGAP2CP0DJJ0 459 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 PDE6AP16499 860 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 GUCY1A3Q02108 690 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 FBXW5Q969U6 566 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 WWC2-AS2Q96NR7 200 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 IPO9Q96P70 1041 aaKnown RBP5.58□□□□□ -1.52
VPS13A-213ENST00000539950 KATNBL1Q9H079 304 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 KLC2Q9H0B6 622 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 CATSPERZQ9NTU4 200 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 RIC8BQ9NVN3 520 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 SIRPGQ9P1W8 387 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 PCDHA9Q9Y5H5 950 aa5.58□□□□□ -1.52
VPS13A-213ENST00000539950 KDM2BQ8NHM5 1336 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 PATE3B3GLJ2 98 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 H0Y858 1186 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 KCNK3O14649 394 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 ZNF888P0CJ79 500 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-213ENST00000539950 KRT15P19012 456 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 GTF2F1P35269 517 aaKnown RBP eCLIP5.57□□□□□ -1.52
VPS13A-213ENST00000539950 JAM2P57087 298 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 ZXDAP98168 799 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 SERINC3Q13530 473 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 RASA3Q14644 834 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 ZNF585AQ6P3V2 769 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 SPRED1Q7Z699 444 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 NLGN4XQ8N0W4 816 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 GNRHR2Q96P88 292 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 MRPS23Q9Y3D9 190 aaKnown RBP5.57□□□□□ -1.52
VPS13A-213ENST00000539950 TSC22D4Q9Y3Q8 395 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 SLC4A7Q9Y6M7 1214 aa5.57□□□□□ -1.52
VPS13A-213ENST00000539950 FAM221BA6H8Z2 402 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 ZNF561-AS1K7EIQ3 104 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 CRTAMO95727 393 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 GABREP78334 506 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 FIGNQ5HY92 759 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 C16orf59Q7L2K0 433 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 REXO1L1PQ8IX06 675 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 PALM2Q8IXS6 379 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 SH3RF3Q8TEJ3 882 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-213ENST00000539950 KISS1RQ969F8 398 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-213ENST00000539950 DHRS4Q9BTZ2 278 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 SMURF1Q9HCE7 757 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 ATP23Q9Y6H3 246 aa5.56□□□□□ -1.52
VPS13A-213ENST00000539950 ESYT3A0FGR9 886 aa5.55□□□□□ -1.52
VPS13A-213ENST00000539950 CCDC66A2RUB6 948 aa5.55□□□□□ -1.52
VPS13A-213ENST00000539950 ST5P78524 1137 aa5.55□□□□□ -1.52
VPS13A-213ENST00000539950 SEC23AQ15436 765 aa5.55□□□□□ -1.52
VPS13A-213ENST00000539950 ZC3H7AQ8IWR0 971 aaKnown RBP5.55□□□□□ -1.52
VPS13A-213ENST00000539950 Q8TCH9 128 aa5.55□□□□□ -1.52
VPS13A-213ENST00000539950 LRRC37BQ96QE4 947 aa5.55□□□□□ -1.52
VPS13A-213ENST00000539950 DEF6Q9H4E7 631 aa5.55□□□□□ -1.52
VPS13A-213ENST00000539950 SLC52A2Q9HAB3 445 aa5.55□□□□□ -1.52
VPS13A-213ENST00000539950 ARHGAP28Q9P2N2 729 aa5.55□□□□□ -1.52
VPS13A-213ENST00000539950 ZNF623O75123 536 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 C4BPAP04003 597 aaKnown RBP5.54□□□□□ -1.52
VPS13A-213ENST00000539950 POLD1P28340 1107 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 MC4RP32245 332 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 DNM2P50570 870 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 TOP3AQ13472 1001 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-213ENST00000539950 USP10Q14694 798 aaKnown RBP5.54□□□□□ -1.52
VPS13A-213ENST00000539950 R3HDM1Q15032 1099 aaKnown RBP5.54□□□□□ -1.52
VPS13A-213ENST00000539950 CRY1Q16526 586 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 LONRF2Q1L5Z9 754 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 TCTN3Q6NUS6 607 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 C8orf37Q96NL8 207 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 DEPDC7Q96QD5 511 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 LMF1Q96S06 567 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 HIRIP3Q9BW71 556 aaPredicted RBP5.54□□□□□ -1.52
VPS13A-213ENST00000539950 SEC61A2Q9H9S3 476 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 SNTG2Q9NY99 539 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 PODXL2Q9NZ53 605 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 BTBD7Q9P203 1132 aa5.54□□□□□ -1.52
VPS13A-213ENST00000539950 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-213ENST00000539950 PRAMEF25A6NGN4 478 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 FOXS1O43638 330 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 AKAP8O43823 692 aaKnown RBP5.53□□□□□ -1.52
VPS13A-213ENST00000539950 NAT1P18440 290 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 AOAHP28039 575 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 GJA4P35212 333 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 SELENOPP49908 381 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 IL13RA1P78552 427 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 LACTBP83111 547 aaPredicted RBP5.53□□□□□ -1.52
VPS13A-213ENST00000539950 TM4SF20Q53R12 229 aa5.53□□□□□ -1.52
VPS13A-213ENST00000539950 FAM47CQ5HY64 1035 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms