RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 POTEB3A0JP26 581 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 C19orf67A6NJJ6 358 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 PRC1O43663 620 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 CALM1P0DP23 149 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 CALM2P0DP24 149 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 CALM3P0DP25 149 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 MCM5P33992 734 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 ZP2Q05996 745 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 MTMR1Q13613 665 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 POTEBQ6S5H4 581 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 TSHZ1Q6ZSZ6 1077 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 CRIPAKQ8N1N5 446 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 PLVAPQ9BX97 442 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 JADE2Q9NQC1 790 aa15.58■□□□□ 0.08
SS18-204ENST00000539244 CCDC69A6NI79 296 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 RRN3P2A6NIE6 340 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 GRM6O15303 877 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 DGKIO75912 1065 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 MARK3P27448 753 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 TEX2Q8IWB9 1127 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 DNAJB3Q8WWF6 145 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 GLG1Q92896 1179 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 CLDND1Q9NY35 253 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 CDY2AQ9Y6F7 541 aa15.57■□□□□ 0.08
SS18-204ENST00000539244 SPDYE3A6NKU9 549 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 DCXO43602 365 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 MMP1P03956 469 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 MRPS6P82932 125 aaKnown RBP15.56■□□□□ 0.08
SS18-204ENST00000539244 HYAL1Q12794 435 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 SMAD2Q15796 467 aaKnown RBP15.56■□□□□ 0.08
SS18-204ENST00000539244 UBE2SQ16763 222 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 NFXL1Q6ZNB6 911 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 ADHFE1Q8IWW8 467 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 CMTR1Q8N1G2 835 aaKnown RBP15.56■□□□□ 0.08
SS18-204ENST00000539244 LINC01599Q8WXQ3 324 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 P2RX5Q93086 422 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 PCYT2Q99447 389 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 FTHL17Q9BXU8 183 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 LSG1Q9H089 658 aaKnown RBP15.56■□□□□ 0.08
SS18-204ENST00000539244 AGO3Q9H9G7 860 aaKnown RBP15.56■□□□□ 0.08
SS18-204ENST00000539244 PCDHA6Q9UN73 950 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 PCDHA8Q9Y5H6 950 aa15.56■□□□□ 0.08
SS18-204ENST00000539244 C5orf42Q9H799 3197 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 PIEZO1Q92508 2521 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 INSRRP14616 1297 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 RXRAP19793 462 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 CAMK1Q14012 370 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 COL9A3Q14050 684 aaPredicted RBP15.55■□□□□ 0.08
SS18-204ENST00000539244 BTG3Q14201 252 aaPredicted RBP15.55■□□□□ 0.08
SS18-204ENST00000539244 IER5Q5VY09 327 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 TMTC3Q6ZXV5 915 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 SGMS1Q86VZ5 419 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 TNPO1Q92973 898 aaKnown RBP15.55■□□□□ 0.08
SS18-204ENST00000539244 JPH1Q9HDC5 661 aaPredicted RBP15.55■□□□□ 0.08
SS18-204ENST00000539244 SLC9A2Q9UBY0 812 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 LOXHD1Q8IVV2 1947 aa15.55■□□□□ 0.08
SS18-204ENST00000539244 KIAA1671Q9BY89 1806 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 NFASCO94856 1347 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 IGSF9BQ9UPX0 1349 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 KDM3AQ9Y4C1 1321 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 CD52P31358 61 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 DLX2Q07687 328 aaPredicted RBP15.54■□□□□ 0.08
SS18-204ENST00000539244 NAALADL2Q58DX5 795 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 FAM43BQ6ZT52 329 aaPredicted RBP15.54■□□□□ 0.08
SS18-204ENST00000539244 EP400NLQ6ZTU2 488 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 PLPPR4Q7Z2D5 763 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 RTN4RL1Q86UN2 441 aaPredicted RBP15.54■□□□□ 0.08
SS18-204ENST00000539244 CMTR2Q8IYT2 770 aaKnown RBP15.54■□□□□ 0.08
SS18-204ENST00000539244 FANCBQ8NB91 859 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 YTHDC1Q96MU7 727 aaKnown RBP15.54■□□□□ 0.08
SS18-204ENST00000539244 MXRA8Q9BRK3 442 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 KCNH7Q9NS40 1196 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 PKD2L1Q9P0L9 805 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 PLAGL2Q9UPG8 496 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 PCDHA2Q9Y5H9 948 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 SLC12A7Q9Y666 1083 aa15.54■□□□□ 0.08
SS18-204ENST00000539244 hCG_1642624A0A1W2PR95 340 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 SLC27A2O14975 620 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 MBTPS2O43462 519 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 TBX10O75333 385 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 IGBP1P78318 339 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 SMAD4Q13485 552 aaKnown RBP15.53■□□□□ 0.08
SS18-204ENST00000539244 NECTIN1Q15223 517 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 NPAS4Q8IUM7 802 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 UPF3BQ9BZI7 483 aaKnown RBP15.53■□□□□ 0.08
SS18-204ENST00000539244 FAM49AQ9H0Q0 323 aaPredicted RBP15.53■□□□□ 0.08
SS18-204ENST00000539244 KCNH6Q9H252 994 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 AZI2Q9H6S1 392 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 TRPV2Q9Y5S1 764 aa15.53■□□□□ 0.08
SS18-204ENST00000539244 MRPL42Q9Y6G3 142 aaKnown RBP15.53■□□□□ 0.08
SS18-204ENST00000539244 M0QZ92 97 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 ATG7O95352 703 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 IRS1P35568 1242 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 ACTR2P61160 394 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 ADAM15Q13444 863 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 PLCB4Q15147 1175 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 CSPP1Q1MSJ5 1256 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 CREB3L3Q68CJ9 461 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 HEATR3Q7Z4Q2 680 aa15.52■□□□□ 0.08
SS18-204ENST00000539244 NME8Q8N427 588 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms