RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 A0A0U1RQG5 324 aaPredicted RBP13.42□□□□□ -0.26
CLIP1-208ENST00000537004 CCDC194A0A1B0GVG4 234 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 ARVCFO00192 962 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 MCM7P33993 719 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 NAPAP54920 295 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 PURAQ00577 322 aaKnown RBP13.42□□□□□ -0.26
CLIP1-208ENST00000537004 ARHGAP1Q07960 439 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 ITGA7Q13683 1181 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 PKNOX2Q96KN3 472 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 ZMYND12Q9H0C1 365 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 PCDHA6Q9UN73 950 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 PCDHA8Q9Y5H6 950 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 A6NJR5 290 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 CPT1AP50416 773 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 CHMP4BP1P59074 171 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 AOPEPQ8N6M6 819 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 PDILTQ8N807 584 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 EPSTI1Q96J88 318 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 LBHD1Q9BQE6 289 aaPredicted RBP13.42□□□□□ -0.26
CLIP1-208ENST00000537004 BPIFA3Q9BQP9 254 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 TRIM5Q9C035 493 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 TMEM39AQ9NV64 488 aa13.42□□□□□ -0.26
CLIP1-208ENST00000537004 HOOK1Q9UJC3 728 aaKnown RBP13.42□□□□□ -0.26
CLIP1-208ENST00000537004 VWA3AA6NCI4 1184 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 DCDC2CA8MYV0 355 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 RBAK-RBAKDNI3L0D1 243 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 NKRFO15226 690 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLIP1-208ENST00000537004 ZEB2O60315 1214 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 ZNF75DP51815 510 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 PLA2G4DQ86XP0 818 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 FAM126BQ8IXS8 530 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 SAMD3Q8N6K7 520 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 SYMPKQ92797 1274 aaKnown RBP13.41□□□□□ -0.26
CLIP1-208ENST00000537004 CUL5Q93034 780 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 TOX2Q96NM4 488 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 TRPV6Q9H1D0 765 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 SERTAD1Q9UHV2 236 aa13.41□□□□□ -0.26
CLIP1-208ENST00000537004 PIK3CDO00329 1044 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 SOX1O00570 391 aaPredicted RBP13.4□□□□□ -0.26
CLIP1-208ENST00000537004 ACTN4O43707 911 aaKnown RBP13.4□□□□□ -0.26
CLIP1-208ENST00000537004 CCND2P30279 289 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 BMP8BP34820 402 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 ISM2Q6H9L7 571 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 SARM1Q6SZW1 724 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 SLC43A3Q8NBI5 491 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 C6orf50Q9HD87 102 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 PCDHA5Q9Y5H7 936 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLIP1-208ENST00000537004 SMCO2A6NFE2 343 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 hCG_1984214I3L0E3 225 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 CABYRO75952 493 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 GH1P01241 217 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 RAG1P15918 1043 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 GNA11P29992 359 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 SEMA3FQ13275 785 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 POSTNQ15063 836 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 INF2Q27J81 1249 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 HSDL1Q3SXM5 330 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 KANK3Q6NY19 840 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 ZNF713Q8N859 430 aaPredicted RBP13.4□□□□□ -0.26
CLIP1-208ENST00000537004 SPC24Q8NBT2 197 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 TRMT13Q9NUP7 481 aaKnown RBP13.4□□□□□ -0.26
CLIP1-208ENST00000537004 TBX21Q9UL17 535 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 TELO2Q9Y4R8 837 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 FRMPD4Q14CM0 1322 aa13.4□□□□□ -0.26
CLIP1-208ENST00000537004 PRUNE2Q8WUY3 3088 aa13.4□□□□□ -0.27
CLIP1-208ENST00000537004 A0A087X0B3 334 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 KIAA0355O15063 1070 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 B4GALT4O60513 344 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 GGPS1O95749 300 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 MMP3P08254 477 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 UBA1P22314 1058 aaKnown RBP13.39□□□□□ -0.27
CLIP1-208ENST00000537004 EPHB4P54760 987 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 NBPF20Q3BBV1 942 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 ARL6IP4Q66PJ3 421 aaKnown RBP13.39□□□□□ -0.27
CLIP1-208ENST00000537004 C4orf32Q8N8J7 132 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 LRCH3Q96II8 777 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 PPP1R12CQ9BZL4 782 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 UMODL1Q5DID0 1318 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 ESYT2A0FGR8 921 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 GOLGA6L6A8MZA4 724 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 RRP9O43818 475 aaKnown RBP13.39□□□□□ -0.27
CLIP1-208ENST00000537004 CD4P01730 458 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 IL17AQ16552 155 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 BRDTQ58F21 947 aaPredicted RBP13.39□□□□□ -0.27
CLIP1-208ENST00000537004 C9orf50Q5SZB4 431 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 KRT25Q7Z3Z0 450 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.39□□□□□ -0.27
CLIP1-208ENST00000537004 DHX37Q8IY37 1157 aaKnown RBP13.39□□□□□ -0.27
CLIP1-208ENST00000537004 TDHQ8IZJ6 230 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 DHX58Q96C10 678 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 INPP4AQ96PE3 977 aaPredicted RBP13.39□□□□□ -0.27
CLIP1-208ENST00000537004 MTG1Q9BT17 334 aaPredicted RBP13.39□□□□□ -0.27
CLIP1-208ENST00000537004 TMEM260Q9NX78 707 aa13.39□□□□□ -0.27
CLIP1-208ENST00000537004 PRR29P0C7W0 189 aa13.38□□□□□ -0.27
CLIP1-208ENST00000537004 ZNF286BP0CG31 522 aa13.38□□□□□ -0.27
CLIP1-208ENST00000537004 FAM47CQ5HY64 1035 aa13.38□□□□□ -0.27
CLIP1-208ENST00000537004 CELF3Q5SZQ8 465 aaKnown RBP13.38□□□□□ -0.27
CLIP1-208ENST00000537004 NT5DC1Q5TFE4 455 aa13.38□□□□□ -0.27
CLIP1-208ENST00000537004 PCNX4Q63HM2 1172 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms