RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 SDSP20132 328 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 MC3RP41968 323 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 MECP2P51608 486 aaKnown RBP6.88□□□□□ -1.31
CD44-231ENST00000531110 TM4SF20Q53R12 229 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 TMED8Q6PL24 325 aaPredicted RBP6.88□□□□□ -1.31
CD44-231ENST00000531110 UBE2R2Q712K3 238 aaPredicted RBP6.88□□□□□ -1.31
CD44-231ENST00000531110 TTLL6Q8N841 843 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 IGSF22Q8N9C0 903 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 ZSCAN18Q8TBC5 510 aaPredicted RBP6.88□□□□□ -1.31
CD44-231ENST00000531110 TMEM209Q96SK2 561 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 COQ6Q9Y2Z9 468 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 TNPO3Q9Y5L0 923 aaKnown RBP6.88□□□□□ -1.31
CD44-231ENST00000531110 ATP23Q9Y6H3 246 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 PMF1-BGLAPU3KQ54 211 aa6.88□□□□□ -1.31
CD44-231ENST00000531110 DNM2P50570 870 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 JAM2P57087 298 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 HERVK_113P62684 666 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 ZKSCAN8Q15776 578 aaPredicted RBP6.87□□□□□ -1.31
CD44-231ENST00000531110 PAN2Q504Q3 1202 aaKnown RBP6.87□□□□□ -1.31
CD44-231ENST00000531110 CD300LDQ6UXZ3 194 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 TSHZ1Q6ZSZ6 1077 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 EP400NLQ6ZTU2 488 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 SAPCD2Q86UD0 394 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 OSTM1Q86WC4 334 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 SIAH1Q8IUQ4 282 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 PPM1KQ8N3J5 372 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 KYQ8NBH2 561 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 FNIP1Q8TF40 1166 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 SLKQ9H2G2 1235 aaPredicted RBP6.87□□□□□ -1.31
CD44-231ENST00000531110 TELO2Q9Y4R8 837 aa6.87□□□□□ -1.31
CD44-231ENST00000531110 SH3D21A4FU49 640 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 NUAK1O60285 661 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 PTPN1P18031 435 aaKnown RBP6.86□□□□□ -1.31
CD44-231ENST00000531110 LIMS1P48059 325 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 ITGA1P56199 1179 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 TCERG1LQ5VWI1 586 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 CTR9Q6PD62 1173 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 LRRTM3Q86VH5 581 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 PTRH1Q86Y79 214 aaKnown RBP6.86□□□□□ -1.31
CD44-231ENST00000531110 C1QL4Q86Z23 238 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 KRTAP19-1Q8IUB9 90 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 NOSTRINQ8IVI9 506 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 LRRC56Q8IYG6 542 aaPredicted RBP6.86□□□□□ -1.31
CD44-231ENST00000531110 AHI1Q8N157 1196 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 CHST14Q8NCH0 376 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 PWWP2AQ96N64 755 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 GORASP1Q9BQQ3 440 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 C11orf84Q9BUA3 381 aaPredicted RBP6.86□□□□□ -1.31
CD44-231ENST00000531110 BOCQ9BWV1 1114 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 TERF2IPQ9NYB0 399 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 SAMD15Q9P1V8 674 aa6.86□□□□□ -1.31
CD44-231ENST00000531110 FEZ2Q9UHY8 353 aaPredicted RBP6.86□□□□□ -1.31
CD44-231ENST00000531110 SLC12A8A0AV02 714 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 CCER2I3L3R5 266 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 CYP7B1O75881 506 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 GLRX3O76003 335 aaKnown RBP6.85□□□□□ -1.31
CD44-231ENST00000531110 PLA2G1BP04054 148 aaKnown RBP6.85□□□□□ -1.31
CD44-231ENST00000531110 STAT5AP42229 794 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 AFF3P51826 1226 aaKnown RBP6.85□□□□□ -1.31
CD44-231ENST00000531110 SATB1Q01826 763 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 OS9Q13438 667 aaPredicted RBP6.85□□□□□ -1.31
CD44-231ENST00000531110 ZNF460Q14592 562 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 VWA3BQ502W6 1294 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 DNTTIP2Q5QJE6 756 aaKnown RBP6.85□□□□□ -1.31
CD44-231ENST00000531110 EXOC8Q8IYI6 725 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 FAM26EQ8N5C1 309 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 LINC01356Q8N9X3 169 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.85□□□□□ -1.31
CD44-231ENST00000531110 DDX1Q92499 740 aaKnown RBP6.85□□□□□ -1.31
CD44-231ENST00000531110 KRTAP9-2Q9BYQ4 174 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 CD244Q9BZW8 370 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 CABP5Q9NP86 173 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 B3GALT1Q9Y5Z6 326 aa6.85□□□□□ -1.31
CD44-231ENST00000531110 RAD50Q92878 1312 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 CBX4O00257 560 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 CHGBP05060 677 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 JMJD7P0C870 316 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 CFPP27918 469 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 DLX2Q07687 328 aaPredicted RBP6.84□□□□□ -1.31
CD44-231ENST00000531110 CFAP100Q494V2 611 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 BTBD8Q5XKL5 378 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 CDCA2Q69YH5 1023 aaPredicted RBP6.84□□□□□ -1.31
CD44-231ENST00000531110 NBPF5PQ86XG9 351 aaPredicted RBP6.84□□□□□ -1.31
CD44-231ENST00000531110 PROSER1Q86XN7 944 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 CREBRFQ8IUR6 639 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 CISD2Q8N5K1 135 aaKnown RBP6.84□□□□□ -1.31
CD44-231ENST00000531110 C2orf69Q8N8R5 385 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 DLG3Q92796 817 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 WNK4Q96J92 1243 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 DLL4Q9NR61 685 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 KCNH7Q9NS40 1196 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 SLC52A1Q9NWF4 448 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 MAPRE3Q9UPY8 281 aa6.84□□□□□ -1.31
CD44-231ENST00000531110 FAM83GA6ND36 823 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 FAM90A27PA6NNH2 459 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 M0R2C6 588 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 ACOT7O00154 380 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 LTFP02788 710 aa6.83□□□□□ -1.32
CD44-231ENST00000531110 ENO2P09104 434 aaPredicted RBP6.83□□□□□ -1.32
CD44-231ENST00000531110 NEFHP12036 1026 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms