RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.31□□□□□ -1.72
CD44-229ENST00000528672 PMM1Q92871 262 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 TOX2Q96NM4 488 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 DIRC2Q96SL1 478 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 SEMA4AQ9H3S1 761 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 AASDHPPTQ9NRN7 309 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 ZIM2Q9NZV7 527 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 KLHL14Q9P2G3 628 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 PALD1Q9ULE6 856 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 X6R8D5 127 aa4.31□□□□□ -1.72
CD44-229ENST00000528672 NCANO14594 1321 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 MYOCOSA0A1B0GUC4 107 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 A0A1W2PQ27 194 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 A0A1W2PQ64 194 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 A0A1W2PQC6 194 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 A0A1W2PQD8 194 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 E2F8A0AVK6 867 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 PTPDC1A2A3K4 754 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 F8W031 263 aaPredicted RBP4.3□□□□□ -1.72
CD44-229ENST00000528672 AKAP10O43572 662 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 KRT18P05783 430 aaKnown RBP4.3□□□□□ -1.72
CD44-229ENST00000528672 NAT1P18440 290 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 ATF3P18847 181 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 GNALP38405 381 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 RHBDL3P58872 404 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 PRR5P85299 388 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 CAP1Q01518 475 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 DSG1Q02413 1049 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 BIRC2Q13490 618 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 KIZQ2M2Z5 673 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 HABP4Q5JVS0 413 aaKnown RBP4.3□□□□□ -1.72
CD44-229ENST00000528672 PAQR3Q6TCH7 311 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 OTOP3Q7RTS5 596 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 DDX53Q86TM3 631 aaKnown RBP4.3□□□□□ -1.72
CD44-229ENST00000528672 ZBTB46Q86UZ6 589 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 CABP7Q86V35 215 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 ANKLE2Q86XL3 938 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 Q8N1Y9 231 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 NETO2Q8NC67 525 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 FBXW5Q969U6 566 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 CHMP4CQ96CF2 233 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 YIPF4Q9BSR8 244 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 MCOLN1Q9GZU1 580 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.3□□□□□ -1.72
CD44-229ENST00000528672 BCCIPQ9P287 314 aaKnown RBP eCLIP4.3□□□□□ -1.72
CD44-229ENST00000528672 EDARQ9UNE0 448 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 SPEF1Q9Y4P9 236 aa4.3□□□□□ -1.72
CD44-229ENST00000528672 TCAF2A6NFQ2 919 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 FAM47E-STBD1D6RA91 191 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 PLIN1O60240 522 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 GNAT1P11488 350 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 BPIP17213 487 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 CFPP27918 469 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 MC4RP32245 332 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 GTF2A2P52657 109 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 EPHB3P54753 998 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 DLG4P78352 724 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 TUSC3Q13454 348 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 PIN1Q13526 163 aaPredicted RBP4.29□□□□□ -1.72
CD44-229ENST00000528672 SLC9A5Q14940 896 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 RTP5Q14D33 572 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 MAP9Q49MG5 647 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 STEAP3Q658P3 488 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 RSPO2Q6UXX9 243 aaPredicted RBP4.29□□□□□ -1.72
CD44-229ENST00000528672 MILR1Q7Z6M3 343 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 C14orf80Q86SX3 495 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 ZNF605Q86T29 641 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 KIF18BQ86Y91 864 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 SIAH1Q8IUQ4 282 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 NOSTRINQ8IVI9 506 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 CNTD1Q8N815 330 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 HOOK2Q96ED9 719 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 ALG1Q9BT22 464 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 RNF38Q9H0F5 515 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 PRDM12Q9H4Q4 367 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 TRHDEQ9UKU6 1024 aa4.29□□□□□ -1.72
CD44-229ENST00000528672 APOBEC2Q9Y235 224 aaKnown RBP4.29□□□□□ -1.72
CD44-229ENST00000528672 IRS2Q9Y4H2 1338 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 TCRBV5S2A0A599 114 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 GOLGA6CA6NDK9 693 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 GOLGA6BA6NDN3 693 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 RFXAPO00287 272 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 ETV2O00321 342 aaPredicted RBP4.28□□□□□ -1.72
CD44-229ENST00000528672 N4BP3O15049 544 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 MYO1BO43795 1136 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 EIF3JO75822 258 aaKnown RBP4.28□□□□□ -1.72
CD44-229ENST00000528672 GOLGA6DP0CG33 693 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 VIPR1P32241 457 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 IL2P60568 153 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 ST5P78524 1137 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 ZNF200P98182 395 aaPredicted RBP4.28□□□□□ -1.72
CD44-229ENST00000528672 HLTFQ14527 1009 aaKnown RBP eCLIP4.28□□□□□ -1.72
CD44-229ENST00000528672 RAB3GAP1Q15042 981 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 PLEKHN1Q494U1 663 aaPredicted RBP4.28□□□□□ -1.72
CD44-229ENST00000528672 SYDE2Q5VT97 1194 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 ESRP1Q6NXG1 681 aaKnown RBP4.28□□□□□ -1.72
CD44-229ENST00000528672 C16orf59Q7L2K0 433 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 AMIGO3Q86WK7 504 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 C1QL4Q86Z23 238 aa4.28□□□□□ -1.72
CD44-229ENST00000528672 RIOX2Q8IUF8 465 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms