RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 C2orf69Q8N8R5 385 aa6.88□□□□□ -1.31
CD44-223ENST00000526553 IGDCC4Q8TDY8 1250 aa6.88□□□□□ -1.31
CD44-223ENST00000526553 TLDC2A0PJX2 215 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 M0R2C6 588 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 CHGBP05060 677 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 FSTL4Q6MZW2 842 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 UBE2R2Q712K3 238 aaPredicted RBP6.87□□□□□ -1.31
CD44-223ENST00000526553 CHST14Q8NCH0 376 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 DLG3Q92796 817 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 BOCQ9BWV1 1114 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 KRTAP9-9Q9BYP9 154 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 KRTAP9-4Q9BYQ2 154 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 XYLT2Q9H1B5 865 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 KCNH7Q9NS40 1196 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 CROTQ9UKG9 612 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 TMA7Q9Y2S6 64 aaKnown RBP6.87□□□□□ -1.31
CD44-223ENST00000526553 B3GALT1Q9Y5Z6 326 aa6.87□□□□□ -1.31
CD44-223ENST00000526553 PRAMEF25A6NGN4 478 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 DDX3XO00571 662 aaKnown RBP eCLIP6.86□□□□□ -1.31
CD44-223ENST00000526553 SCDO00767 359 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 HIP1RO75146 1068 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 AOAHP28039 575 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 MLLT6P55198 1093 aaPredicted RBP6.86□□□□□ -1.31
CD44-223ENST00000526553 IRF9Q00978 393 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 SEC23AQ15436 765 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 PLEKHG4Q58EX7 1191 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 PIK3R6Q5UE93 754 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 PRAMEF18Q5VWM3 479 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 CPZQ66K79 652 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 GIMAP6Q6P9H5 292 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 NIM1KQ8IY84 436 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 SYT8Q8NBV8 401 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 FEZF2Q8TBJ5 459 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 ZCCHC14Q8WYQ9 949 aaKnown RBP6.86□□□□□ -1.31
CD44-223ENST00000526553 ORAI3Q9BRQ5 295 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 CABP5Q9NP86 173 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 KCND1Q9NSA2 647 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 ARHGAP20Q9P2F6 1191 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 ARHGAP28Q9P2N2 729 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 ZFP69BQ9UJL9 534 aa6.86□□□□□ -1.31
CD44-223ENST00000526553 C9orf118A6NHY6 69 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 CBX4O00257 560 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 NOBOXO60393 691 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 JMJD7P0C870 316 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 ZBTB48P10074 688 aaPredicted RBP6.85□□□□□ -1.31
CD44-223ENST00000526553 COL6A1P12109 1028 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 POU3F2P20265 443 aaPredicted RBP6.85□□□□□ -1.31
CD44-223ENST00000526553 SDHAP31040 664 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 IL13P35225 146 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 GJA9P57773 515 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 SMAD2Q15796 467 aaKnown RBP6.85□□□□□ -1.31
CD44-223ENST00000526553 TM4SF20Q53R12 229 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 DALRD3Q5D0E6 543 aaKnown RBP6.85□□□□□ -1.31
CD44-223ENST00000526553 NT5DC1Q5TFE4 455 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 CDCA2Q69YH5 1023 aaPredicted RBP6.85□□□□□ -1.31
CD44-223ENST00000526553 MFSD3Q96ES6 412 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 YTHDC1Q96MU7 727 aaKnown RBP6.85□□□□□ -1.31
CD44-223ENST00000526553 L2HGDHQ9H9P8 463 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 SLC39A2Q9NP94 309 aa6.85□□□□□ -1.31
CD44-223ENST00000526553 OTOL1A6NHN0 477 aaPredicted RBP6.84□□□□□ -1.31
CD44-223ENST00000526553 TRAF5O00463 557 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 FBXO21O94952 628 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 HOXA5P20719 270 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 PTGS1P23219 599 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 C21orf62-AS1Q17RA5 79 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 CFAP100Q494V2 611 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 FRMD5Q7Z6J6 570 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 LRRTM3Q86VH5 581 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 TXNDC5Q8NBS9 432 aaKnown RBP6.84□□□□□ -1.31
CD44-223ENST00000526553 WNK4Q96J92 1243 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 BTBD7Q9P203 1132 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 B4GALT6Q9UBX8 382 aa6.84□□□□□ -1.31
CD44-223ENST00000526553 FAM83GA6ND36 823 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 IL18BPO95998 194 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 KNG1P01042 644 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 RGL3Q3MIN7 710 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 PHF19Q5T6S3 580 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 MCTP2Q6DN12 878 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 SDE2Q6IQ49 451 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 CC2D1AQ6P1N0 951 aaPredicted RBP6.83□□□□□ -1.32
CD44-223ENST00000526553 PKN3Q6P5Z2 889 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 TRMT10BQ6PF06 316 aaKnown RBP6.83□□□□□ -1.32
CD44-223ENST00000526553 KIF18BQ86Y91 864 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 USP40Q9NVE5 1235 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 RTEL1Q9NZ71 1219 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 FTSJ1Q9UET6 329 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 ASB1Q9Y576 335 aa6.83□□□□□ -1.32
CD44-223ENST00000526553 PTPDC1A2A3K4 754 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 FOXP2O15409 715 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 IGSF3O75054 1194 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 MMEP08473 750 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 HSD3B2P26439 372 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 GLRBP48167 497 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 TAF7LQ5H9L4 462 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 DPP8Q6V1X1 898 aaPredicted RBP6.82□□□□□ -1.32
CD44-223ENST00000526553 DHX37Q8IY37 1157 aaKnown RBP6.82□□□□□ -1.32
CD44-223ENST00000526553 PPM1KQ8N3J5 372 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 STPG3Q8N7X2 389 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 ASB15Q8WXK1 588 aa6.82□□□□□ -1.32
CD44-223ENST00000526553 DDX1Q92499 740 aaKnown RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms