RNA–Protein interactions for RNA: ENST00000524652.1

CSDE1-208, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-208ENST00000524652 ST13P5Q8NFI4 369 aaPredicted RBP4.49□□□□□ -1.69
CSDE1-208ENST00000524652 DCAF4Q8WV16 495 aa4.49□□□□□ -1.69
CSDE1-208ENST00000524652 ZFYVE21Q9BQ24 234 aa4.49□□□□□ -1.69
CSDE1-208ENST00000524652 AARSD1Q9BTE6 412 aaKnown RBP4.49□□□□□ -1.69
CSDE1-208ENST00000524652 PHF20Q9BVI0 1012 aa4.49□□□□□ -1.69
CSDE1-208ENST00000524652 PDGFDQ9GZP0 370 aaPredicted RBP4.49□□□□□ -1.69
CSDE1-208ENST00000524652 TMPRSS5Q9H3S3 457 aa4.49□□□□□ -1.69
CSDE1-208ENST00000524652 DLL4Q9NR61 685 aa4.49□□□□□ -1.69
CSDE1-208ENST00000524652 FTSJ1Q9UET6 329 aa4.49□□□□□ -1.69
CSDE1-208ENST00000524652 WASF3Q9UPY6 502 aa4.49□□□□□ -1.69
CSDE1-208ENST00000524652 NUB1Q9Y5A7 615 aa4.49□□□□□ -1.69
CSDE1-208ENST00000524652 ARHGAP5Q13017 1502 aa4.49□□□□□ -1.69
CSDE1-208ENST00000524652 ADGBQ8N7X0 1667 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 KIDINS220Q9ULH0 1771 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 SYCP2Q9BX26 1530 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 KDM6BO15054 1643 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 MSCO60682 206 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 CHGBP05060 677 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 GRK2P25098 689 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 GRK3P35626 688 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 VASNQ6EMK4 673 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 USP53Q70EK8 1073 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 OTOP3Q7RTS5 596 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 CHST13Q8NET6 341 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 UHMK1Q8TAS1 419 aaKnown RBP4.48□□□□□ -1.69
CSDE1-208ENST00000524652 PIP4K2CQ8TBX8 421 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 DVL3Q92997 716 aaPredicted RBP4.48□□□□□ -1.69
CSDE1-208ENST00000524652 ST7Q9NRC1 585 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 CROTQ9UKG9 612 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 CCDC9Q9Y3X0 531 aaKnown RBP4.48□□□□□ -1.69
CSDE1-208ENST00000524652 FANCAO15360 1455 aa4.48□□□□□ -1.69
CSDE1-208ENST00000524652 MYOM3Q5VTT5 1437 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 DNMT1P26358 1616 aaKnown RBP4.47□□□□□ -1.69
CSDE1-208ENST00000524652 ABCA6Q8N139 1617 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 SLC27A2O14975 620 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 KLF4O43474 513 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 COL6A1P12109 1028 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 EPHB4P54760 987 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 SPIRE1Q08AE8 756 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 STYK1Q6J9G0 422 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 TRMT10BQ6PF06 316 aaKnown RBP4.47□□□□□ -1.69
CSDE1-208ENST00000524652 TMC5Q6UXY8 1006 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 LBX2Q6XYB7 198 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 ARHGEF18Q6ZSZ5 1173 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 DPH6Q7L8W6 267 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 PROSER1Q86XN7 944 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 KBTBD2Q8IY47 623 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 LRRC47Q8N1G4 583 aaKnown RBP4.47□□□□□ -1.69
CSDE1-208ENST00000524652 DTX3Q8N9I9 347 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 ZNF669Q96BR6 464 aaPredicted RBP4.47□□□□□ -1.69
CSDE1-208ENST00000524652 JAM3Q9BX67 310 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 BARX1Q9HBU1 254 aaPredicted RBP4.47□□□□□ -1.69
CSDE1-208ENST00000524652 ARHGEF4Q9NR80 690 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 PPP4R1LQ9P1A2 415 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 PPARGC1AQ9UBK2 798 aaKnown RBP4.47□□□□□ -1.69
CSDE1-208ENST00000524652 ADGRL1O94910 1474 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 CAMSAP2Q08AD1 1489 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 TCOF1Q13428 1488 aaKnown RBP4.47□□□□□ -1.69
CSDE1-208ENST00000524652 KDM5CP41229 1560 aa4.47□□□□□ -1.69
CSDE1-208ENST00000524652 INO80Q9ULG1 1556 aaPredicted RBP4.47□□□□□ -1.69
CSDE1-208ENST00000524652 ZNF644Q9H582 1327 aaPredicted RBP4.46□□□□□ -1.69
CSDE1-208ENST00000524652 AKNAQ7Z591 1439 aa4.46□□□□□ -1.69
CSDE1-208ENST00000524652 TEX14Q8IWB6 1497 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 NEO1Q92859 1461 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 MBD5Q9P267 1494 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 CCNB3Q8WWL7 1395 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 MATN3O15232 486 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 GNAT1P11488 350 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 PPP2CBP62714 309 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 PPP2CAP67775 309 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 NFATC3Q12968 1075 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 SMAD2Q15796 467 aaKnown RBP4.46□□□□□ -1.7
CSDE1-208ENST00000524652 HABP4Q5JVS0 413 aaKnown RBP4.46□□□□□ -1.7
CSDE1-208ENST00000524652 SLFN13Q68D06 897 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 LIMS2Q7Z4I7 341 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 CIR1Q86X95 450 aaPredicted RBP4.46□□□□□ -1.7
CSDE1-208ENST00000524652 DNERQ8NFT8 737 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.46□□□□□ -1.7
CSDE1-208ENST00000524652 IGDCC4Q8TDY8 1250 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 CLEC4DQ8WXI8 215 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 CDK5RAP1Q96SZ6 601 aaKnown RBP4.46□□□□□ -1.7
CSDE1-208ENST00000524652 ADAM29Q9UKF5 820 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 CDK11AQ9UQ88 783 aaPredicted RBP4.46□□□□□ -1.7
CSDE1-208ENST00000524652 TSC22D4Q9Y3Q8 395 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 ZMYM4Q5VZL5 1548 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 FGD6Q6ZV73 1430 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 TRAPPC8Q9Y2L5 1435 aa4.46□□□□□ -1.7
CSDE1-208ENST00000524652 ARHGEF5Q12774 1597 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 TRAV20A0A0B4J274 112 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 NPEPPSL1A6NEC2 478 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 GPR42O15529 346 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 KLHL18O94889 574 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 PABPC1P11940 636 aaKnown RBP4.45□□□□□ -1.7
CSDE1-208ENST00000524652 FAHP16930 419 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 EPHA5P54756 1037 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 GPR85P60893 370 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 TUSC3Q13454 348 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 RAB33AQ14088 237 aa4.45□□□□□ -1.7
CSDE1-208ENST00000524652 PAN2Q504Q3 1202 aaKnown RBP4.45□□□□□ -1.7
CSDE1-208ENST00000524652 CD276Q5ZPR3 534 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms