RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 RILPL2Q969X0 211 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 INTS4Q96HW7 963 aaKnown RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 DRC1Q96MC2 740 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 UBAC1Q9BSL1 405 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 ZSWIM5Q9P217 1185 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 MAD2L2Q9UI95 211 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 GTF3C5Q9Y5Q8 519 aaPredicted RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 ABCA2Q9BZC7 2435 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 ABCA12Q86UK0 2595 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 NEDD4P46934 1319 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 EMSYQ7Z589 1322 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 ZFYVE26Q68DK2 2539 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 TEX15Q9BXT5 2789 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CYP3A7-CYP3A51PA0A087WV96 503 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 BLACEA4D250 179 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 MOXD2PA6NHM9 499 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 TBX3O15119 743 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 RAG1P15918 1043 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CYP3A7P24462 503 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CLK2P49760 499 aaKnown RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 ANTXR2P58335 489 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 JAG1P78504 1218 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 MTMR2Q13614 643 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 DNAJC14Q6Y2X3 702 aaPredicted RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 SYNE3Q6ZMZ3 975 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 RAB44Q7Z6P3 723 aaPredicted RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 EDC3Q96F86 508 aaKnown RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 AMNQ9BXJ7 453 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 SENP6Q9GZR1 1112 aaPredicted RBP3.27□□□□□ -1.89
MCF2-208ENST00000519895 KIF3AQ9Y496 699 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 SNX14Q9Y5W7 946 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 SQORQ9Y6N5 450 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 DNAH12Q6ZR08 3092 aa3.27□□□□□ -1.89
MCF2-208ENST00000519895 CNOT1A5YKK6 2376 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 CFHP08603 1231 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 FCER1AP12319 257 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CYBAP13498 195 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 GCFC2P16383 781 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 ATF7P17544 494 aaPredicted RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 CALML3P27482 149 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 STAT3P40763 770 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 TRAPPC10P48553 1259 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 HMGN5P82970 282 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 PTH1RQ03431 593 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CFHR1Q03591 330 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 TCP10Q12799 353 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 SEMA3FQ13275 785 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 IFIT1BQ5T764 474 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 ATL3Q6DD88 541 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CPLX2Q6PUV4 134 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 CWC27Q6UX04 472 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 STOX1Q6ZVD7 989 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 ANKRD33Q7Z3H0 272 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 GPR142Q7Z601 462 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 EXOC8Q8IYI6 725 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 TMEM199Q8N511 208 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 ARRDC4Q8NCT1 418 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PNMA1Q8ND90 353 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 NLRP7Q8WX94 980 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CRYGNQ8WXF5 182 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 GPRASP2Q96D09 838 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 KATNBL1Q9H079 304 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 VRTNQ9H8Y1 702 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 IL23AQ9NPF7 189 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PHF24Q9UPV7 400 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PCDHGA2Q9Y5H1 932 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CYP46A1Q9Y6A2 500 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 COL5A1P20908 1838 aaPredicted RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 ELP1O95163 1332 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PHLPP2Q6ZVD8 1323 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 MYH6P13533 1939 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 COL1A2P08123 1366 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 ZEB2O60315 1214 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 LILRB5O75023 590 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 EYA4O95677 639 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CYP2D6P10635 497 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 HOXC8P31273 242 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 RFC2P35250 354 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 SLC1A4P43007 532 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 USP11P51784 963 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 HMGCS2P54868 508 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 GJA9P57773 515 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 DSG2Q14126 1118 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 ELOAQ14241 798 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 C8orf34Q49A92 452 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 BLOC1S2Q6QNY1 142 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 ZNF654Q8IZM8 581 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 KLHDC9Q8NEP7 349 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CTCFLQ8NI51 663 aaPredicted RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 SMARCC2Q8TAQ2 1214 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 CLEC4DQ8WXI8 215 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 TNPO1Q92973 898 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 MOV10L1Q9BXT6 1211 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 ZMYND12Q9H0C1 365 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 ABHD16BQ9H3Z7 469 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 ZNF768Q9H5H4 540 aaKnown RBP3.26□□□□□ -1.89
MCF2-208ENST00000519895 BCAS3Q9H6U6 928 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 GPCPD1Q9NPB8 672 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 RIC8AQ9NPQ8 531 aa3.26□□□□□ -1.89
MCF2-208ENST00000519895 PRR12Q9ULL5 1215 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms