RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 TDP2O95551 362 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 FGBP02675 491 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 SLC26A2P50443 739 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 STAT5BP51692 787 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 SP4Q02446 784 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 PLCB4Q15147 1175 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 NONOQ15233 471 aaKnown RBP eCLIP11.02□□□□□ -0.656e-7■■■□□ 19.2
RNF4-221ENST00000513643 RETREG2Q8NC44 543 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 LMBR1Q8WVP7 490 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 ATP6V0A1Q93050 837 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 BACH2Q9BYV9 841 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 KCNMB3Q9NPA1 279 aa11.02□□□□□ -0.65
RNF4-221ENST00000513643 TRIP12Q14669 1992 aaPredicted RBP11.02□□□□□ -0.65
RNF4-221ENST00000513643 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.01□□□□□ -0.65
RNF4-221ENST00000513643 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.01□□□□□ -0.65
RNF4-221ENST00000513643 ZBTB42B2RXF5 422 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 CD2BP2O95400 341 aaKnown RBP11.01□□□□□ -0.65
RNF4-221ENST00000513643 MMP1P03956 469 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 GNAT1P11488 350 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 XBP1P17861 261 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 KRT76Q01546 638 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 NR5A1Q13285 461 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 INF2Q27J81 1249 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 TCTN1Q2MV58 587 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 ZNF618Q5T7W0 954 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 LRRC8DQ7L1W4 858 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 CCDC60Q8IWA6 550 aaPredicted RBP11.01□□□□□ -0.65
RNF4-221ENST00000513643 SMAP1Q8IYB5 467 aaPredicted RBP11.01□□□□□ -0.65
RNF4-221ENST00000513643 CCDC155Q8N6L0 562 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 RNPC3Q96LT9 517 aaKnown RBP11.01□□□□□ -0.65
RNF4-221ENST00000513643 NOD1Q9Y239 953 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 PCDHA10Q9Y5I2 948 aa11.01□□□□□ -0.65
RNF4-221ENST00000513643 PRUNE2Q8WUY3 3088 aa11□□□□□ -0.65
RNF4-221ENST00000513643 EYSQ5T1H1 3165 aa11□□□□□ -0.65
RNF4-221ENST00000513643 TRANK1O15050 2925 aa11□□□□□ -0.65
RNF4-221ENST00000513643 RRN3P2A6NIE6 340 aa11□□□□□ -0.65
RNF4-221ENST00000513643 BTBD18B2RXH4 712 aa11□□□□□ -0.65
RNF4-221ENST00000513643 SLC37A4O43826 429 aa11□□□□□ -0.65
RNF4-221ENST00000513643 STBD1O95210 358 aa11□□□□□ -0.65
RNF4-221ENST00000513643 INSRRP14616 1297 aa11□□□□□ -0.65
RNF4-221ENST00000513643 GCFC2P16383 781 aaKnown RBP11□□□□□ -0.65
RNF4-221ENST00000513643 CHMP4BP1P59074 171 aa11□□□□□ -0.65
RNF4-221ENST00000513643 MGAT3Q09327 533 aa11□□□□□ -0.65
RNF4-221ENST00000513643 PPFIA1Q13136 1202 aa11□□□□□ -0.65
RNF4-221ENST00000513643 GRIK4Q16099 956 aa11□□□□□ -0.65
RNF4-221ENST00000513643 KRT40Q6A162 431 aa11□□□□□ -0.65
RNF4-221ENST00000513643 TAF2Q6P1X5 1199 aa11□□□□□ -0.65
RNF4-221ENST00000513643 RUFY4Q6ZNE9 571 aa11□□□□□ -0.65
RNF4-221ENST00000513643 NEK8Q86SG6 692 aa11□□□□□ -0.65
RNF4-221ENST00000513643 CCDC83Q8IWF9 413 aa11□□□□□ -0.65
RNF4-221ENST00000513643 ATP8B4Q8TF62 1192 aa11□□□□□ -0.65
RNF4-221ENST00000513643 HAS1Q92839 578 aa11□□□□□ -0.65
RNF4-221ENST00000513643 GLG1Q92896 1179 aa11□□□□□ -0.65
RNF4-221ENST00000513643 OSBPL7Q9BZF2 842 aa11□□□□□ -0.65
RNF4-221ENST00000513643 AZI2Q9H6S1 392 aa11□□□□□ -0.65
RNF4-221ENST00000513643 TMEM265A0A087WTH1 108 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 FAM205CA6NFA0 338 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 RSPH10B2B2RC85 870 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 TBX3O15119 743 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 ZNF862O60290 1169 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 CHRNA1P02708 482 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 RSPH10BP0C881 870 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 MARK3P27448 753 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 KRT2P35908 639 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 HMGN5P82970 282 aaKnown RBP10.99□□□□□ -0.65
RNF4-221ENST00000513643 SPIRE1Q08AE8 756 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 SWSAP1Q6NVH7 229 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 MIS18BP1Q6P0N0 1132 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 PIK3AP1Q6ZUJ8 805 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 OTOP2Q7RTS6 562 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 DIS3L2Q8IYB7 885 aaKnown RBP10.99□□□□□ -0.65
RNF4-221ENST00000513643 FBXO18Q8NFZ0 1043 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 RDM1Q8NG50 284 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 GJA10Q969M2 543 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 FAM20AQ96MK3 541 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 UIMC1Q96RL1 719 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 CEP89Q96ST8 783 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 UNC45AQ9H3U1 944 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 ZNF302Q9NR11 478 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 DISC1Q9NRI5 854 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 MTMR10Q9NXD2 777 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 VAV3Q9UKW4 847 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 PCDHA2Q9Y5H9 948 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 IGSF9BQ9UPX0 1349 aa10.99□□□□□ -0.65
RNF4-221ENST00000513643 SCN5AQ14524 2016 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 CCDC194A0A1B0GVG4 234 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 POTEB3A0JP26 581 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 GRXCR1A8MXD5 290 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 WDR64B1ANS9 1081 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 RBAK-RBAKDNI3L0D1 243 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 DDX39AO00148 427 aaKnown RBP10.98□□□□□ -0.65
RNF4-221ENST00000513643 WNT7AO00755 349 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 HBP1O60381 514 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 BAIAP3O94812 1187 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 PSAPP07602 524 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 SFNP31947 248 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 THPOP40225 353 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 PPP2R5CQ13362 524 aa10.98□□□□□ -0.65
RNF4-221ENST00000513643 TARBP2Q15633 366 aaKnown RBP10.98□□□□□ -0.65
RNF4-221ENST00000513643 LETM2Q2VYF4 491 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 224.5 ms