RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 STX10O60499 249 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 GNA14O95837 355 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 MYCNP04198 464 aaPredicted RBP9.29□□□□□ -0.92
RNF4-220ENST00000513578 TUBB4AP04350 444 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 NR3C2P08235 984 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 GUCY2CP25092 1073 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 ICAM3P32942 547 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 JAK3P52333 1124 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 ZNF131P52739 623 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 MARSP56192 900 aaKnown RBP9.29□□□□□ -0.92
RNF4-220ENST00000513578 PSMC6P62333 389 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 UBXN2AP68543 259 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 KRT76Q01546 638 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 PABPC4Q13310 644 aaKnown RBP eCLIP9.29□□□□□ -0.92
RNF4-220ENST00000513578 ITGB3BPQ13352 177 aaPredicted RBP9.29□□□□□ -0.92
RNF4-220ENST00000513578 MTMR1Q13613 665 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 NFIL3Q16649 462 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 EDRF1Q3B7T1 1238 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 ARHGEF16Q5VV41 709 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 RINT1Q6NUQ1 792 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 NSMFQ6X4W1 530 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 C1orf186Q6ZWK4 172 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 MIER3Q7Z3K6 550 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 TMEM139Q8IV31 216 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 TC2NQ8N9U0 490 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 RETREG2Q8NC44 543 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 CEP63Q96MT8 703 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 TIPINQ9BVW5 301 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 NAA15Q9BXJ9 866 aaKnown RBP9.29□□□□□ -0.92
RNF4-220ENST00000513578 ZSWIM4Q9H7M6 989 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 A1CFQ9NQ94 594 aaKnown RBP9.29□□□□□ -0.92
RNF4-220ENST00000513578 RGL1Q9NZL6 768 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 ODF2LQ9ULJ1 636 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 COL4A3BPQ9Y5P4 624 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 PFASO15067 1338 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 UBE4BO95155 1302 aa9.29□□□□□ -0.92
RNF4-220ENST00000513578 DOCK5Q9H7D0 1870 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 LOC102724159A0A0B4J2E5 919 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 AKR1B15C9JRZ8 316 aaPredicted RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 EIF3DO15371 548 aaKnown RBP eCLIP9.28□□□□□ -0.92
RNF4-220ENST00000513578 ARHGAP6O43182 974 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 SLC25A27O95847 323 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 SSBP05455 408 aaKnown RBP eCLIP9.28□□□□□ -0.92
RNF4-220ENST00000513578 KRT18P05783 430 aaKnown RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 TPM2P07951 284 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 MAPTP10636 758 aaKnown RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 EIF2AK2P19525 551 aaKnown RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 FKBP1BP68106 108 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 FKBP3Q00688 224 aaKnown RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 MOGSQ13724 837 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 PRKG1Q13976 671 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 CTTNQ14247 550 aaKnown RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 PWP2Q15269 919 aaKnown RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 HSP90AA4PQ58FG1 418 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 HERC4Q5GLZ8 1057 aaPredicted RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 FIGNQ5HY92 759 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 TREML2Q5T2D2 321 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 ZNF746Q6NUN9 644 aaPredicted RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 LRRC55Q6ZSA7 311 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 FASTKD5Q7L8L6 764 aaKnown RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 CNGA4Q8IV77 575 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 TPH2Q8IWU9 490 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 C4orf19Q8IY42 314 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 SCFD1Q8WVM8 642 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 CNOT6LQ96LI5 555 aaKnown RBP9.28□□□□□ -0.92
RNF4-220ENST00000513578 ERGIC2Q96RQ1 377 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 REEP2Q9BRK0 252 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 TUBGCP2Q9BSJ2 902 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 NUP58Q9BVL2 599 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 BHMT2Q9H2M3 363 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 KCTD10Q9H3F6 313 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 ELP3Q9H9T3 547 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 HOMER2Q9NSB8 354 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 AGTPBP1Q9UPW5 1226 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 TRAF3IP3Q9Y228 551 aa9.28□□□□□ -0.92
RNF4-220ENST00000513578 WDR64B1ANS9 1081 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 SPATA31C2B4DYI2 1134 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 KIF2AO00139 706 aaPredicted RBP9.27□□□□□ -0.93
RNF4-220ENST00000513578 PDXKO00764 312 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 DKC1O60832 514 aaKnown RBP eCLIP9.27□□□□□ -0.93
RNF4-220ENST00000513578 TPM1P09493 284 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 QARSP47897 775 aaKnown RBP9.27□□□□□ -0.93
RNF4-220ENST00000513578 CYP4A11Q02928 519 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 MAN2A1Q16706 1144 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 GNPTABQ3T906 1256 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 PPFIBP1Q86W92 1011 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 SMAP1Q8IYB5 467 aaPredicted RBP9.27□□□□□ -0.93
RNF4-220ENST00000513578 CCAR2Q8N163 923 aaKnown RBP9.27□□□□□ -0.93
RNF4-220ENST00000513578 GTF3C2Q8WUA4 911 aaPredicted RBP9.27□□□□□ -0.93
RNF4-220ENST00000513578 TMEM174Q8WUU8 243 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 HPS3Q969F9 1004 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 UIMC1Q96RL1 719 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 LXNQ9BS40 222 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 VPS16Q9H269 839 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 ANKEF1Q9NU02 776 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 TAB2Q9NYJ8 693 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 SLC45A1Q9Y2W3 748 aa9.27□□□□□ -0.93
RNF4-220ENST00000513578 PCNTO95613 3336 aa9.26□□□□□ -0.93
RNF4-220ENST00000513578 TRPM7Q96QT4 1865 aa9.26□□□□□ -0.93
RNF4-220ENST00000513578 NPHP3-ACAD11A0A0J9YXS1 232 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms