RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 HMGCS2P54868 508 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 IRX5P78411 483 aaPredicted RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 FKBP3Q00688 224 aaKnown RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 NR1H3Q13133 447 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 EIF2B5Q13144 721 aaKnown RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 PAK2Q13177 524 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 KCNJ12Q14500 433 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 DNAJC21Q5F1R6 531 aaKnown RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 KIAA1755Q5JYT7 1200 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 XRRA1Q6P2D8 792 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 ERO1BQ86YB8 467 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 DHX38Q92620 1227 aaKnown RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 MXD3Q9BW11 206 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 PIH1D3Q9NQM4 214 aaKnown RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 SEL1LQ9UBV2 794 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 MID2Q9UJV3 735 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 SERPINA10Q9UK55 444 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 PTPRMP28827 1452 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 QARSP47897 775 aaKnown RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 MXI1P50539 228 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 REM2Q8IYK8 340 aaPredicted RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 MAP4K1Q92918 833 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 RPGRIP1Q96KN7 1286 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 GSDMAQ96QA5 445 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 COLEC11Q9BWP8 271 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 ZNF212Q9UDV6 495 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 ARHGAP4P98171 946 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 ARL6IP4Q66PJ3 421 aaKnown RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 SRRM1Q8IYB3 904 aaKnown RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 PGBD3Q8N328 593 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 SEPT1Q8WYJ6 367 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 HTATIP2Q9BUP3 242 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 FAM207AQ9NSI2 230 aaPredicted RBP4.6□□□□□ -1.67
VCAN-209ENST00000513016 SLC38A7Q9NVC3 462 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 BAG5Q9UL15 447 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 STAP1Q9ULZ2 295 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 GCC2Q8IWJ2 1684 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 PREX2Q70Z35 1606 aa4.6□□□□□ -1.67
VCAN-209ENST00000513016 UBN2Q6ZU65 1347 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 TULP4Q9NRJ4 1543 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SH2B2O14492 632 aaPredicted RBP4.59□□□□□ -1.67
VCAN-209ENST00000513016 KRT15P19012 456 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 NR2F2P24468 414 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 CACNB3P54284 484 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SPATA1Q5VX52 437 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PLEKHH3Q7Z736 793 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 THNSL1Q8IYQ7 743 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 DCP1BQ8IZD4 617 aaKnown RBP4.59□□□□□ -1.67
VCAN-209ENST00000513016 CCNYQ8ND76 341 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 OTUD7AQ8TE49 926 aaPredicted RBP4.59□□□□□ -1.67
VCAN-209ENST00000513016 ATP6V1E2Q96A05 226 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SLC39A2Q9NP94 309 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 ADGRB3O60242 1522 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 IFNB1P01574 187 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PEX3P56589 373 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PPFIA1Q13136 1202 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SH2D4BQ5SQS7 431 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 CMTR1Q8N1G2 835 aaKnown RBP4.59□□□□□ -1.67
VCAN-209ENST00000513016 NEDD1Q8NHV4 660 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 CCHCR1Q8TD31 782 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 CHMP6Q96FZ7 201 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 TNIP3Q96KP6 325 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 CALR3Q96L12 384 aaKnown RBP4.59□□□□□ -1.67
VCAN-209ENST00000513016 STRBPQ96SI9 672 aaKnown RBP4.59□□□□□ -1.67
VCAN-209ENST00000513016 MAGEB5Q9BZ81 275 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 EFCC1Q9HA90 598 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 HOMER3Q9NSC5 361 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PCDHB7Q9Y5E2 793 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 CPDO75976 1380 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 JAK2O60674 1132 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 TBC1D8O95759 1140 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 POLR2FP61218 127 aaKnown RBP4.59□□□□□ -1.67
VCAN-209ENST00000513016 OSTNP61366 133 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 LAMC2Q13753 1193 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 TBC1D19Q8N5T2 526 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SAMD3Q8N6K7 520 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 STKLD1Q8NE28 680 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 TRIM58Q8NG06 486 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SCFD2Q8WU76 684 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 DOLKQ9UPQ8 538 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 ZNF148Q9UQR1 794 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 FAM50BQ9Y247 325 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SCINQ9Y6U3 715 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 MCF2LO15068 1137 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PAMP19021 973 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SCP2P22307 547 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 TMEM132BQ14DG7 1078 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 UBE2SQ16763 222 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 KRBA2Q6ZNG9 492 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 DEFB132Q7Z7B7 95 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SCYL3Q8IZE3 742 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PLEKHF1Q96S99 279 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 IFIH1Q9BYX4 1025 aaKnown RBP4.59□□□□□ -1.67
VCAN-209ENST00000513016 NYAP2Q9P242 653 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 SLC9A2Q9UBY0 812 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 MAFGO15525 162 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PRKAB2O43741 272 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 RPS6KA5O75582 802 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 PFKFB1P16118 471 aa4.59□□□□□ -1.67
VCAN-209ENST00000513016 STAT5BP51692 787 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms