RNA–Protein interactions for RNA: ENST00000511001.2

CHFR-208, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 892 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-208	ENST00000511001	ACTR2	P61160	394 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	TAP1	Q03518	808 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	PPFIA1	Q13136	1202 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	GRIK4	Q16099	956 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	PLEKHG4	Q58EX7	1191 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	FAM26D	Q5JW98	314 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	MARCH8	Q5T0T0	291 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	RUFY4	Q6ZNE9	571 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	RPAIN	Q86UA6	219 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	PLA2G4D	Q86XP0	818 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	RASGRP4	Q8TDF6	673 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	ZNF274	Q96GC6	653 aa	Predicted RBP	13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	GAS2L1	Q99501	681 aa	Predicted RBP	13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	VPS54	Q9P1Q0	977 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	NLRC5	Q86WI3	1866 aa		13.73	□□□□□ -0.21
CHFR-208	ENST00000511001	IGKV6D-21	A0A0A0MT36	114 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	LCHN	A4D1U4	455 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	EPOP	A6NHQ4	379 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	DHX15	O43143	795 aa	Known RBP	13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	GNA11	P29992	359 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	ZNF76	P36508	570 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	AKAP17A	Q02040	695 aa	Known RBP	13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	MGAT3	Q09327	533 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	IKBKE	Q14164	716 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	SPRED2	Q7Z698	418 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	REXO1	Q8N1G1	1221 aa	Known RBP	13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	SYMPK	Q92797	1274 aa	Known RBP	13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	GLG1	Q92896	1179 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	SDF4	Q9BRK5	362 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	TRANK1	O15050	2925 aa		13.72	□□□□□ -0.21
CHFR-208	ENST00000511001	TTC3	P53804	2025 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	KIF28P	B7ZC32	967 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	RFXAP	O00287	272 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	TLL1	O43897	1013 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	EFCAB14	O75071	495 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	GJB5	O95377	273 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	CHRNA1	P02708	482 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	INSRR	P14616	1297 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	CIITA	P33076	1130 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	PLCB4	Q15147	1175 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	MCTP2	Q6DN12	878 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	ABHD15	Q6UXT9	468 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	PLPPR4	Q7Z2D5	763 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	CCDC148	Q8NFR7	591 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	LENG9	Q96B70	501 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	ZBTB10	Q96DT7	871 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	UIMC1	Q96RL1	719 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	CERS4	Q9HA82	394 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	SH3GLB2	Q9NR46	395 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	PDRG1	Q9NUG6	133 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	TUBE1	Q9UJT0	475 aa		13.71	□□□□□ -0.21
CHFR-208	ENST00000511001	DDX39A	O00148	427 aa	Known RBP	13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	COL9A1	P20849	921 aa		13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	STAT5B	P51692	787 aa		13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	SSRP1	Q08945	709 aa	Known RBP	13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	STK3	Q13188	491 aa		13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	NPY5R	Q15761	445 aa		13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	TAF2	Q6P1X5	1199 aa		13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	BICD2	Q8TD16	824 aa		13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	SEPT8	Q92599	483 aa		13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	AIFM3	Q96NN9	605 aa		13.7	□□□□□ -0.22
CHFR-208	ENST00000511001	REV3L	O60673	3130 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	13.69	□□□□□ -0.22
CHFR-208	ENST00000511001		M0R2N6	131 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	IPO5	O00410	1097 aa	Known RBP	13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	DEXI	O95424	95 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	ATP4A	P20648	1035 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	IGFBP4	P22692	258 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	IGBP1	P78318	339 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	SCRN1	Q12765	414 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	TJAP1	Q5JTD0	557 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	CCDC60	Q8IWA6	550 aa	Predicted RBP	13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	TRAPPC12	Q8WVT3	735 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	DNAJB3	Q8WWF6	145 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	IL17RA	Q96F46	866 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	RAD9A	Q99638	391 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	ZNF577	Q9BSK1	485 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	AZI2	Q9H6S1	392 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	RALGAPA2	Q2PPJ7	1873 aa		13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	TCF20	Q9UGU0	1960 aa	Known RBP	13.69	□□□□□ -0.22
CHFR-208	ENST00000511001	RRN3P2	A6NIE6	340 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	GHR	P10912	638 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	POU3F3	P20264	500 aa	Predicted RBP	13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	NLRP5	P59047	1200 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	ANAPC15	P60006	121 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	SET	Q01105	290 aa	Predicted RBP	13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	LPIN1	Q14693	890 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	FAM117B	Q6P1L5	589 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	TRIM22	Q8IYM9	498 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	MYOCD	Q8IZQ8	938 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	PPM1E	Q8WY54	764 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	ARNTL2	Q8WYA1	636 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	ZBED2	Q9BTP6	218 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	RAPGEFL1	Q9UHV5	662 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	TPCN1	Q9ULQ1	816 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	PCDHA4	Q9UN74	947 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	TRPC6	Q9Y210	931 aa		13.68	□□□□□ -0.22
CHFR-208	ENST00000511001	CDY2A	Q9Y6F7	541 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms