RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 CEP131Q9UPN4 1083 aa10.3□□□□□ -0.76
NUP54-207ENST00000508583 NRCAMQ92823 1304 aa10.3□□□□□ -0.76
NUP54-207ENST00000508583 MYH9P35579 1960 aaKnown RBP10.29□□□□□ -0.76
NUP54-207ENST00000508583 IGKV6D-21A0A0A0MT36 114 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 GSTTP1A0A1W2PQM5 241 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 C17orf102A2RUQ5 167 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 RRN3P2A6NIE6 340 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 CHMP2AO43633 222 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 STX6O43752 255 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 EDIL3O43854 480 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 CCNE2O96020 404 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 OR52Z1P0C646 297 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 RAG1P15918 1043 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 SYT1P21579 422 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 BFSP2Q13515 415 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 PTGISQ16647 500 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 ABHD15Q6UXT9 468 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 CKAP2LQ8IYA6 745 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 CAGE1Q8TC20 777 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 NEK9Q8TD19 979 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 PCDH10Q9P2E7 1040 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 DAXXQ9UER7 740 aaPredicted RBP10.29□□□□□ -0.76
NUP54-207ENST00000508583 GTF2IRD1Q9UHL9 959 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 TRPC6Q9Y210 931 aa10.29□□□□□ -0.76
NUP54-207ENST00000508583 POTEB3A0JP26 581 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 FAM205CA6NFA0 338 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 KIF28PB7ZC32 967 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 KIAA0355O15063 1070 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 HBP1O60381 514 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 CAND2O75155 1236 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 PARNO95453 639 aaKnown RBP10.28□□□□□ -0.76
NUP54-207ENST00000508583 CD4P01730 458 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 SMIM10L2AP0DMW4 78 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 SMIM10L2BP0DMW5 78 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 MARK3P27448 753 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 ANP32AP39687 249 aaKnown RBP10.28□□□□□ -0.76
NUP54-207ENST00000508583 PRPHP41219 470 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 FAAP100Q0VG06 881 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 PPFIA1Q13136 1202 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 PRPF38BQ5VTL8 546 aaKnown RBP10.28□□□□□ -0.76
NUP54-207ENST00000508583 SWSAP1Q6NVH7 229 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 TAF2Q6P1X5 1199 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 POTEBQ6S5H4 581 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 RSPH3Q86UC2 560 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 TRIM50Q86XT4 487 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 EXOC8Q8IYI6 725 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 ERMNQ8TAM6 284 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 ATP8B4Q8TF62 1192 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 BBXQ8WY36 941 aaPredicted RBP10.28□□□□□ -0.76
NUP54-207ENST00000508583 HAS1Q92839 578 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 UNC45AQ9H3U1 944 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 HIPK3Q9H422 1215 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 BCAS3Q9H6U6 928 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 TTC12Q9H892 705 aaPredicted RBP10.28□□□□□ -0.76
NUP54-207ENST00000508583 PDLIM7Q9NR12 457 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 NRBP2Q9NSY0 501 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 FOXD4L1Q9NU39 408 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 GRIN2DO15399 1336 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 IGSF9BQ9UPX0 1349 aa10.28□□□□□ -0.76
NUP54-207ENST00000508583 COL1A2P08123 1366 aa10.27□□□□□ -0.76
NUP54-207ENST00000508583 B4GALT4O60513 344 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 P4HBP07237 508 aaKnown RBP10.27□□□□□ -0.77
NUP54-207ENST00000508583 HOXC8P31273 242 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 TXKP42681 527 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 PSMC5P62195 406 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 PTK7Q13308 1070 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 EPHA7Q15375 998 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 ZNF174Q15697 407 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 ZNF484Q5JVG2 852 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 HAUS3Q68CZ6 603 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 CCDC60Q8IWA6 550 aaPredicted RBP10.27□□□□□ -0.77
NUP54-207ENST00000508583 ZNF710Q8N1W2 664 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 TMEM199Q8N511 208 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 RETREG2Q8NC44 543 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 MTMR9Q96QG7 549 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 RTN4Q9NQC3 1192 aaKnown RBP10.27□□□□□ -0.77
NUP54-207ENST00000508583 TRMT13Q9NUP7 481 aaKnown RBP10.27□□□□□ -0.77
NUP54-207ENST00000508583 HDAC6Q9UBN7 1215 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 GABBR1Q9UBS5 961 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 VAV3Q9UKW4 847 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 TBX21Q9UL17 535 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 PPME1Q9Y570 386 aa10.27□□□□□ -0.77
NUP54-207ENST00000508583 MAFBQ9Y5Q3 323 aaPredicted RBP10.27□□□□□ -0.77
NUP54-207ENST00000508583 TIMP1P01033 207 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 OATP04181 439 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 RFC2P35250 354 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 QARSP47897 775 aaKnown RBP10.26□□□□□ -0.77
NUP54-207ENST00000508583 PTGDRQ13258 359 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 PPIGQ13427 754 aaKnown RBP eCLIP10.26□□□□□ -0.77
NUP54-207ENST00000508583 GRIK4Q16099 956 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 XKR3Q5GH77 459 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 ARL6IP4Q66PJ3 421 aaKnown RBP10.26□□□□□ -0.77
NUP54-207ENST00000508583 NCAPH2Q6IBW4 605 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 GDF6Q6KF10 455 aaPredicted RBP10.26□□□□□ -0.77
NUP54-207ENST00000508583 B3GNT9Q6UX72 402 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 DTHD1Q6ZMT9 781 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 OTUD6AQ7L8S5 288 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 PPP1R13LQ8WUF5 828 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 LMBR1Q8WVP7 490 aa10.26□□□□□ -0.77
NUP54-207ENST00000508583 UIMC1Q96RL1 719 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms