RNA–Protein interactions for RNA: ENST00000495899.1

MRPL55-233, Transcript of mitochondrial ribosomal protein L55, human

TSL 2

Gene MRPL55, Length 790 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-233	ENST00000495899	ACTR2	P61160	394 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	RBL2	Q08999	1139 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	ST3GAL1	Q11201	340 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	PTK7	Q13308	1070 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	TRIM29	Q14134	588 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	SHH	Q15465	462 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899		Q4G0T1	1027 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	PPP1R15B	Q5SWA1	713 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	UTP14C	Q5TAP6	766 aa	Known RBP	14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	PLPPR4	Q7Z2D5	763 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	RPUSD2	Q8IZ73	545 aa	Known RBP	14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	PPP1R13L	Q8WUF5	828 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	GLG1	Q92896	1179 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	TNPO1	Q92973	898 aa	Known RBP	14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	CTAGE1	Q96RT6	745 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	BACH2	Q9BYV9	841 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	AZI2	Q9H6S1	392 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	BRMS1	Q9HCU9	246 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	PCDH10	Q9P2E7	1040 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	TELO2	Q9Y4R8	837 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	EMSY	Q7Z589	1322 aa		14.03	□□□□□ -0.16
MRPL55-233	ENST00000495899	UMODL1	Q5DID0	1318 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	NRCAM	Q92823	1304 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	CCDC194	A0A1B0GVG4	234 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	C17orf102	A2RUQ5	167 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	JAK2	O60674	1132 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	PARN	O95453	639 aa	Known RBP	14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	RFC2	P35250	354 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	MCM2	P49736	904 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	SLC26A2	P50443	739 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	EPHB4	P54760	987 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	CCL23	P55773	120 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	HMGN5	P82970	282 aa	Known RBP	14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	ZNF746	Q6NUN9	644 aa	Predicted RBP	14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	SERINC5	Q86VE9	423 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	CCDC83	Q8IWF9	413 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	AFAP1L1	Q8TED9	768 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	LENG9	Q96B70	501 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	MBOAT7	Q96N66	472 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	RIT2	Q99578	217 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	NAP1L4	Q99733	375 aa	Known RBP	14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	WNT8A	Q9H1J5	351 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	RNPEP	Q9H4A4	650 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	IL23A	Q9NPF7	189 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	GJB4	Q9NTQ9	266 aa		14.02	□□□□□ -0.17
MRPL55-233	ENST00000495899	IGKV6D-21	A0A0A0MT36	114 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	C2orf72	A6NCS6	295 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	CCNE2	O96020	404 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	MMP1	P03956	469 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	PFKM	P08237	780 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	IQCF3	P0C7M6	154 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	GCFC2	P16383	781 aa	Known RBP	14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	KRT2	P35908	639 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	STAT5B	P51692	787 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	KRT76	Q01546	638 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	C9orf50	Q5SZB4	431 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	PPP4R3A	Q6IN85	833 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	PSRC1	Q6PGN9	363 aa	Predicted RBP	14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	ABHD15	Q6UXT9	468 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	C16orf59	Q7L2K0	433 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	NEK8	Q86SG6	692 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	TRIM50	Q86XT4	487 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	SMAP1	Q8IYB5	467 aa	Predicted RBP	14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	ATP6V0A1	Q93050	837 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	PCYT2	Q99447	389 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	TCEAL9	Q9UHQ7	104 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	LTBP2	Q14767	1821 aa		14.01	□□□□□ -0.17
MRPL55-233	ENST00000495899	MSH4	O15457	936 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	DTNB	O60941	627 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	CAND2	O75155	1236 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	FGB	P02675	491 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	SELP	P16109	830 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	ADAM17	P78536	824 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	FOXK1	P85037	733 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	DSG2	Q14126	1118 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	HIC1	Q14526	733 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	INF2	Q27J81	1249 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	TMEM240	Q5SV17	173 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	FAM160B1	Q5W0V3	765 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	KRT40	Q6A162	431 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	GPR153	Q6NV75	609 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	MIS18BP1	Q6P0N0	1132 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	OXER1	Q8TDS5	423 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	SLC5A5	Q92911	643 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	TNFRSF25	Q93038	417 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	14	□□□□□ -0.17	2e-7	■■■□□ 15.4
MRPL55-233	ENST00000495899	SETD4	Q9NVD3	440 aa		14	□□□□□ -0.17
MRPL55-233	ENST00000495899	RRN3P2	A6NIE6	340 aa		13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	TDP2	O95551	362 aa		13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	CKB	P12277	381 aa		13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	ZNF200	P98182	395 aa	Predicted RBP	13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	SAFB	Q15424	915 aa	Known RBP eCLIP	13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	TRIM71	Q2Q1W2	868 aa	Known RBP	13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	PIK3AP1	Q6ZUJ8	805 aa		13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	ZNF365	Q70YC5	407 aa		13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	DHX38	Q92620	1227 aa	Known RBP	13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	SCLY	Q96I15	445 aa		13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	RNPC3	Q96LT9	517 aa	Known RBP	13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	DDX25	Q9UHL0	483 aa	Known RBP	13.99	□□□□□ -0.17
MRPL55-233	ENST00000495899	PCDHA10	Q9Y5I2	948 aa		13.99	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms