RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SLC35G1Q2M3R5 365 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 ODR4Q5SWX8 454 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 EP400NLQ6ZTU2 488 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 MICU3Q86XE3 530 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 TMEM192Q8IY95 271 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 BANK1Q8NDB2 785 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 NSUN3Q9H649 340 aaKnown RBP13.24□□□□□ -0.29
COL6A3-213ENST00000493475 JADE2Q9NQC1 790 aa13.24□□□□□ -0.29
COL6A3-213ENST00000493475 MYH7BA7E2Y1 1941 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 SLC27A2O14975 620 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 PLEKHA8P1O95397 391 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 HMGB1P09429 215 aaKnown RBP13.23□□□□□ -0.29
COL6A3-213ENST00000493475 STAG3L1P0CL83 205 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 GHRP10912 638 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 ALADP13716 330 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 KCNA2P16389 499 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 MARK3P27448 753 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 CTNNB1P35222 781 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 NAPAP54920 295 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 SEMA3FQ13275 785 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 HIC1Q14526 733 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 CREB3L3Q68CJ9 461 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 MCTP2Q6DN12 878 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 TSHZ1Q6ZSZ6 1077 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 TMTC3Q6ZXV5 915 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 SGMS1Q86VZ5 419 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 CCDC82Q8N4S0 544 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 SRBD1Q8N5C6 995 aaKnown RBP13.23□□□□□ -0.29
COL6A3-213ENST00000493475 ESYT1Q9BSJ8 1104 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 SLC9A2Q9UBY0 812 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 PCDHA6Q9UN73 950 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 ARIH1Q9Y4X5 557 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-213ENST00000493475 PCDHA8Q9Y5H6 950 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 SQORQ9Y6N5 450 aa13.23□□□□□ -0.29
COL6A3-213ENST00000493475 ADGRA3Q8IWK6 1321 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-213ENST00000493475 CCDC196A0A1B0GTZ2 297 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 ZNF76P36508 570 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 ADCY7P51828 1080 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 AP3B2Q13367 1082 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 BTG3Q14201 252 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-213ENST00000493475 CSPP1Q1MSJ5 1256 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 TCTN1Q2MV58 587 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 PTCRAQ6ISU1 281 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-213ENST00000493475 CCDC12Q8WUD4 166 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-213ENST00000493475 NEK1Q96PY6 1258 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 UPF3BQ9BZI7 483 aaKnown RBP13.22□□□□□ -0.29
COL6A3-213ENST00000493475 PKD2L1Q9P0L9 805 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 UBIAD1Q9Y5Z9 338 aa13.22□□□□□ -0.29
COL6A3-213ENST00000493475 COL4A4P53420 1690 aaPredicted RBP13.21□□□□□ -0.29
COL6A3-213ENST00000493475 COL4A6Q14031 1691 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 NFASCO94856 1347 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 ZBTB43O43298 467 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 ITGB5P18084 799 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 RXRAP19793 462 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 IGBP1P78318 339 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 ADAM17P78536 824 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 MRPS6P82932 125 aaKnown RBP13.21□□□□□ -0.29
COL6A3-213ENST00000493475 UBE2SQ16763 222 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 RTN1Q16799 776 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 FAM160B1Q5W0V3 765 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 SPRED2Q7Z698 418 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 GJD3Q8N144 294 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 NME8Q8N427 588 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 PABPC5Q96DU9 382 aaKnown RBP13.21□□□□□ -0.29
COL6A3-213ENST00000493475 POP1Q99575 1024 aaKnown RBP13.21□□□□□ -0.29
COL6A3-213ENST00000493475 MXRA8Q9BRK3 442 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 PLVAPQ9BX97 442 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 LSG1Q9H089 658 aaKnown RBP13.21□□□□□ -0.29
COL6A3-213ENST00000493475 LRFN2Q9ULH4 789 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 TAF6LQ9Y6J9 622 aa13.21□□□□□ -0.29
COL6A3-213ENST00000493475 SIP14410 1827 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 BAZ2BQ9UIF8 2168 aaKnown RBP13.2□□□□□ -0.3
COL6A3-213ENST00000493475 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-213ENST00000493475 FSD2A1L4K1 749 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 MBLAC1A4D2B0 266 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-213ENST00000493475 C5orf67F2Z3F1 127 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 BACH1O14867 736 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 CHRNA1P02708 482 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 BMPR1AP36894 532 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 PLA2G5P39877 138 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 STAT5BP51692 787 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 RCAN1P53805 252 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 PAK2Q13177 524 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 CEP55Q53EZ4 464 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 NAALADL2Q58DX5 795 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 BMP2KLQ5H9B9 411 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 PLPPR4Q7Z2D5 763 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 CMTR1Q8N1G2 835 aaKnown RBP13.2□□□□□ -0.3
COL6A3-213ENST00000493475 DNAJB3Q8WWF6 145 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 FAM49AQ9H0Q0 323 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-213ENST00000493475 BCAS3Q9H6U6 928 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 RIC8AQ9NPQ8 531 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 KCNH7Q9NS40 1196 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 PRKAG3Q9UGI9 489 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 NAP1L2Q9ULW6 460 aaPredicted RBP13.2□□□□□ -0.3
COL6A3-213ENST00000493475 TRPV2Q9Y5S1 764 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 CDY2AQ9Y6F7 541 aa13.2□□□□□ -0.3
COL6A3-213ENST00000493475 GSTTP1A0A1W2PQM5 241 aa13.19□□□□□ -0.3
COL6A3-213ENST00000493475 GOLGA8AA7E2F4 631 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms