RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 DSEQ9UL01 958 aa6.94□□□□□ -1.3
SCN1A-206ENST00000491429 OAZ3Q9UMX2 235 aa6.94□□□□□ -1.3
SCN1A-206ENST00000491429 WDR33Q9C0J8 1336 aaKnown RBP6.94□□□□□ -1.3
SCN1A-206ENST00000491429 ESYT3A0FGR9 886 aa6.93□□□□□ -1.3
SCN1A-206ENST00000491429 AGRPO00253 132 aa6.93□□□□□ -1.3
SCN1A-206ENST00000491429 C1SP09871 688 aa6.93□□□□□ -1.3
SCN1A-206ENST00000491429 CR2P20023 1033 aa6.93□□□□□ -1.3
SCN1A-206ENST00000491429 POLD1P28340 1107 aa6.93□□□□□ -1.3
SCN1A-206ENST00000491429 EPHA5P54756 1037 aa6.93□□□□□ -1.3
SCN1A-206ENST00000491429 TOP3AQ13472 1001 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-206ENST00000491429 SMN1Q16637 294 aaKnown RBP6.93□□□□□ -1.3
SCN1A-206ENST00000491429 TRIM8Q9BZR9 551 aa6.93□□□□□ -1.3
SCN1A-206ENST00000491429 EPN3Q9H201 632 aa6.93□□□□□ -1.3
SCN1A-206ENST00000491429 INHBEP58166 350 aa6.92□□□□□ -1.3
SCN1A-206ENST00000491429 KIZQ2M2Z5 673 aa6.92□□□□□ -1.3
SCN1A-206ENST00000491429 KCTD1Q719H9 257 aa6.92□□□□□ -1.3
SCN1A-206ENST00000491429 OR14A2Q96R54 314 aa6.92□□□□□ -1.3
SCN1A-206ENST00000491429 CEP89Q96ST8 783 aa6.92□□□□□ -1.3
SCN1A-206ENST00000491429 CD244Q9BZW8 370 aa6.92□□□□□ -1.3
SCN1A-206ENST00000491429 CAPN10Q9HC96 672 aa6.92□□□□□ -1.3
SCN1A-206ENST00000491429 KIAA1522Q9P206 1035 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-206ENST00000491429 NUB1Q9Y5A7 615 aa6.92□□□□□ -1.3
SCN1A-206ENST00000491429 SLC30A1Q9Y6M5 507 aa6.92□□□□□ -1.3
SCN1A-206ENST00000491429 MATN2O00339 956 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 CDC14BO60729 498 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 MCM7P33993 719 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 DPTQ07507 201 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 DUSP8Q13202 625 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 NTRK3Q16288 839 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 MAMDC4Q6UXC1 1216 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 POLNQ7Z5Q5 900 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 C1orf210Q8IVY1 113 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 AMER2Q8N7J2 671 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 IL17DQ8TAD2 202 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 DCAF4Q8WV16 495 aa6.91□□□□□ -1.3
SCN1A-206ENST00000491429 BLACEA4D250 179 aa6.9□□□□□ -1.3
SCN1A-206ENST00000491429 PLA2G12BQ9BX93 195 aa6.9□□□□□ -1.3
SCN1A-206ENST00000491429 NR2E1Q9Y466 385 aa6.9□□□□□ -1.3
SCN1A-206ENST00000491429 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-206ENST00000491429 PRODHO43272 600 aa6.89□□□□□ -1.31
SCN1A-206ENST00000491429 CUTAO60888 179 aa6.89□□□□□ -1.31
SCN1A-206ENST00000491429 SOD2P04179 222 aa6.89□□□□□ -1.31
SCN1A-206ENST00000491429 GPR85P60893 370 aa6.89□□□□□ -1.31
SCN1A-206ENST00000491429 DBPQ10586 325 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-206ENST00000491429 TBR1Q16650 682 aa6.89□□□□□ -1.31
SCN1A-206ENST00000491429 ZNF808Q8N4W9 903 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-206ENST00000491429 SH3RF2Q8TEC5 729 aa6.89□□□□□ -1.31
SCN1A-206ENST00000491429 CACTINQ8WUQ7 758 aaKnown RBP6.89□□□□□ -1.31
SCN1A-206ENST00000491429 NEU4Q8WWR8 484 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-206ENST00000491429 PLEKHG4BQ96PX9 1271 aa6.89□□□□□ -1.31
SCN1A-206ENST00000491429 TCRBV5S4A2TA0A5A2 114 aa6.88□□□□□ -1.31
SCN1A-206ENST00000491429 HSP90AA2PQ14568 343 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-206ENST00000491429 ZMAT1Q5H9K5 638 aa6.88□□□□□ -1.31
SCN1A-206ENST00000491429 FAM89AQ96GI7 184 aa6.88□□□□□ -1.31
SCN1A-206ENST00000491429 C12orf65Q9H3J6 166 aaKnown RBP6.88□□□□□ -1.31
SCN1A-206ENST00000491429 IPPKQ9H8X2 491 aa6.88□□□□□ -1.31
SCN1A-206ENST00000491429 ST7Q9NRC1 585 aa6.88□□□□□ -1.31
SCN1A-206ENST00000491429 ACRV1P26436 265 aa6.87□□□□□ -1.31
SCN1A-206ENST00000491429 ETV4P43268 484 aa6.87□□□□□ -1.31
SCN1A-206ENST00000491429 PURAQ00577 322 aaKnown RBP6.87□□□□□ -1.31
SCN1A-206ENST00000491429 FNDC7Q5VTL7 733 aa6.87□□□□□ -1.31
SCN1A-206ENST00000491429 CELF2-AS1Q8N7Q2 184 aa6.87□□□□□ -1.31
SCN1A-206ENST00000491429 OSBP2Q969R2 916 aa6.87□□□□□ -1.31
SCN1A-206ENST00000491429 ZFYVE21Q9BQ24 234 aa6.87□□□□□ -1.31
SCN1A-206ENST00000491429 AARSD1Q9BTE6 412 aaKnown RBP6.87□□□□□ -1.31
SCN1A-206ENST00000491429 KIAA1683Q9H0B3 1180 aa6.87□□□□□ -1.31
SCN1A-206ENST00000491429 ZNF408Q9H9D4 720 aa6.87□□□□□ -1.31
SCN1A-206ENST00000491429 ARHGEF4Q9NR80 690 aa6.87□□□□□ -1.31
SCN1A-206ENST00000491429 FAM47E-STBD1D6RA91 191 aa6.86□□□□□ -1.31
SCN1A-206ENST00000491429 FOXL1Q12952 345 aa6.86□□□□□ -1.31
SCN1A-206ENST00000491429 WDR72Q3MJ13 1102 aa6.86□□□□□ -1.31
SCN1A-206ENST00000491429 BTBD8Q5XKL5 378 aa6.86□□□□□ -1.31
SCN1A-206ENST00000491429 STYK1Q6J9G0 422 aa6.86□□□□□ -1.31
SCN1A-206ENST00000491429 DPP8Q6V1X1 898 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-206ENST00000491429 LARP4Q71RC2 724 aaKnown RBP eCLIP6.86□□□□□ -1.31
SCN1A-206ENST00000491429 ZNF575Q86XF7 245 aa6.86□□□□□ -1.31
SCN1A-206ENST00000491429 VPS37DQ86XT2 251 aa6.86□□□□□ -1.31
SCN1A-206ENST00000491429 IFNL3Q8IZI9 196 aa6.86□□□□□ -1.31
SCN1A-206ENST00000491429 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.86□□□□□ -1.31
SCN1A-206ENST00000491429 CFHR4Q92496 578 aa6.86□□□□□ -1.31
SCN1A-206ENST00000491429 ASXL2Q76L83 1435 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 A0A087X1B8 175 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 UNCXA6NJT0 531 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 FAM90A27PA6NNH2 459 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 ARHGAP6O43182 974 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 FGFR1P11362 822 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 PABPC1P11940 636 aaKnown RBP6.85□□□□□ -1.31
SCN1A-206ENST00000491429 ADCY8P40145 1251 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 INHBCP55103 352 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 NFYCQ13952 458 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 SCYL1Q96KG9 808 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.85□□□□□ -1.31
SCN1A-206ENST00000491429 ZDHHC5Q9C0B5 715 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 MMRN2Q9H8L6 949 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 ARHGAP28Q9P2N2 729 aa6.85□□□□□ -1.31
SCN1A-206ENST00000491429 U2SURPO15042 1029 aaKnown RBP6.84□□□□□ -1.31
SCN1A-206ENST00000491429 HMGCRP04035 888 aa6.84□□□□□ -1.31
SCN1A-206ENST00000491429 PTPN1P18031 435 aaKnown RBP6.84□□□□□ -1.31
SCN1A-206ENST00000491429 MSX2P35548 267 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-206ENST00000491429 KCNQ1P51787 676 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms