RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 FOXD4L5Q5VV16 416 aaPredicted RBP12.24□□□□□ -0.45
VPS13D-210ENST00000489961 NCAPH2Q6IBW4 605 aa12.24□□□□□ -0.45
VPS13D-210ENST00000489961 PDXDC2PQ6P474 469 aa12.24□□□□□ -0.45
VPS13D-210ENST00000489961 ANKRD33Q7Z3H0 272 aa12.24□□□□□ -0.45
VPS13D-210ENST00000489961 SESTD1Q86VW0 696 aa12.24□□□□□ -0.45
VPS13D-210ENST00000489961 CCDC60Q8IWA6 550 aaPredicted RBP12.24□□□□□ -0.45
VPS13D-210ENST00000489961 FOXD4L4Q8WXT5 416 aaPredicted RBP12.24□□□□□ -0.45
VPS13D-210ENST00000489961 KAT6AQ92794 2004 aa12.24□□□□□ -0.45
VPS13D-210ENST00000489961 TOX2Q96NM4 488 aa12.24□□□□□ -0.45
VPS13D-210ENST00000489961 PCYT2Q99447 389 aa12.24□□□□□ -0.45
VPS13D-210ENST00000489961 RAB34Q9BZG1 259 aa12.24□□□□□ -0.45
VPS13D-210ENST00000489961 DKC1O60832 514 aaKnown RBP eCLIP12.23□□□□□ -0.45
VPS13D-210ENST00000489961 GNAT1P11488 350 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 PRPHP41219 470 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 TECP42680 631 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 ATP2C1P98194 919 aaPredicted RBP12.23□□□□□ -0.45
VPS13D-210ENST00000489961 EPHA7Q15375 998 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 FAM126BQ8IXS8 530 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 CKAP2LQ8IYA6 745 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 C7orf61Q8IZ16 206 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 C4orf32Q8N8J7 132 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 ATP6V0A1Q93050 837 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 ZNF396Q96N95 335 aaPredicted RBP12.23□□□□□ -0.45
VPS13D-210ENST00000489961 RNPEPQ9H4A4 650 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 HDAC6Q9UBN7 1215 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 GABBR1Q9UBS5 961 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 GTF2IRD1Q9UHL9 959 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 TRPC6Q9Y210 931 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 NOD1Q9Y239 953 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 MAFBQ9Y5Q3 323 aaPredicted RBP12.23□□□□□ -0.45
VPS13D-210ENST00000489961 NR2E3Q9Y5X4 410 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 BRCA2P51587 3418 aa12.23□□□□□ -0.45
VPS13D-210ENST00000489961 NRCAMQ92823 1304 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 IGSF9BQ9UPX0 1349 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 POTEB3A0JP26 581 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 C17orf102A2RUQ5 167 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 EML1O00423 815 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 HBP1O60381 514 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 B4GALT4O60513 344 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 CLTBP09497 229 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 SMIM10L2AP0DMW4 78 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 SMIM10L2BP0DMW5 78 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 FXR2P51116 673 aaKnown RBP eCLIP12.22□□□□□ -0.45
VPS13D-210ENST00000489961 SPIRE1Q08AE8 756 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 PKP1Q13835 747 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 PLCB4Q15147 1175 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 SF3A1Q15459 793 aaKnown RBP12.22□□□□□ -0.45
VPS13D-210ENST00000489961 ARL6IP4Q66PJ3 421 aaKnown RBP12.22□□□□□ -0.45
VPS13D-210ENST00000489961 FAM173BQ6P4H8 233 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 POTEBQ6S5H4 581 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 DTHD1Q6ZMT9 781 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 ERMNQ8TAM6 284 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 NEK9Q8TD19 979 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 PPP1R13LQ8WUF5 828 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 FAM167AQ96KS9 214 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 PRKAG2Q9UGJ0 569 aa12.22□□□□□ -0.45
VPS13D-210ENST00000489961 POTEMA6NI47 508 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 RRN3P2A6NIE6 340 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 BRD1O95696 1058 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 CD4P01730 458 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 P4HBP07237 508 aaKnown RBP12.21□□□□□ -0.45
VPS13D-210ENST00000489961 QARSP47897 775 aaKnown RBP12.21□□□□□ -0.45
VPS13D-210ENST00000489961 PSMC5P62195 406 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 NUCB2P80303 420 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 PPFIA1Q13136 1202 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 PDIA5Q14554 519 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 PTGISQ16647 500 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 GDF6Q6KF10 455 aaPredicted RBP12.21□□□□□ -0.45
VPS13D-210ENST00000489961 BANK1Q8NDB2 785 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 ATP8B4Q8TF62 1192 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 BBXQ8WY36 941 aaPredicted RBP12.21□□□□□ -0.45
VPS13D-210ENST00000489961 EIF2AK1Q9BQI3 630 aaKnown RBP12.21□□□□□ -0.45
VPS13D-210ENST00000489961 TRPV6Q9H1D0 765 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 PRDM5Q9NQX1 630 aaPredicted RBP12.21□□□□□ -0.45
VPS13D-210ENST00000489961 NRBP2Q9NSY0 501 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 TRMT13Q9NUP7 481 aaKnown RBP12.21□□□□□ -0.45
VPS13D-210ENST00000489961 TMEM39AQ9NV64 488 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 SETD4Q9NVD3 440 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 CLIC4Q9Y696 253 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 STK24Q9Y6E0 443 aa12.21□□□□□ -0.45
VPS13D-210ENST00000489961 COL1A2P08123 1366 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 TRIP12Q14669 1992 aaPredicted RBP12.2□□□□□ -0.46
VPS13D-210ENST00000489961 OATP04181 439 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 INSRRP14616 1297 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 ATP4AP20648 1035 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 PRKCEQ02156 737 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 CYP4A11Q02928 519 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 CEBPZQ03701 1054 aaKnown RBP12.2□□□□□ -0.46
VPS13D-210ENST00000489961 FAAP100Q0VG06 881 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 GRIK4Q16099 956 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 UGCGQ16739 394 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 XKR3Q5GH77 459 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 HAUS3Q68CZ6 603 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 ATL3Q6DD88 541 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 DYDC2Q96IM9 177 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 USP28Q96RU2 1077 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 LXNQ9BS40 222 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 ZSWIM4Q9H7M6 989 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 TSHZ2Q9NRE2 1034 aa12.2□□□□□ -0.46
VPS13D-210ENST00000489961 LRWD1Q9UFC0 647 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms